Home - seqcode/pegr GitHub Wiki

Platform for Epigenomic and Genomic Research (PEGR) is a web service platform that logs metadata for samples and sequencing experiment, manages the data processing workflows, and provides reporting and visualization. PEGR links together people, samples, protocols, sequencer and bioinformatics computation.

• What is PEGR?

• Configurations

• Deployment

• CI Logon

• Authentication and authorization

• Admin

• Projects

• Sample submission form

• Re-assign cohort to another project

• Kicking off analysis pipeline

• PEGR communication with NGS preprocessing scripts

• Analysis workflow tracking and quality control dashboard

• PEGR-Galaxy workflow

• Sequencing reports

• Synchronize database

• Server maintenance