April 28th - sellwe/Genome-Analysis GitHub Wiki

Got the results from circlator. I will continue to work with the file 06.fixtart.fasta from /home/sebase/Genome-Analysis/analyses/02_genome_assembly/pacbio/circlator_run.

It unfortunately didnt manage to circulate anything: [sebase@rackham2 circlator_run]$ cat 04.merge.circularise_details.log

I realized tis after i had checked the quality with quast, ran prokka and MUMmerplot again. Whoops.

So, im retracing my steps. Im going to run canu 2.0 which has created circular genomes for others. If that works i will continue with that assembly. REMEBER TO LOG IN WITH -X.

While Canu is running I am starting to set up my RNA preprocessing. I created soft links to my data directory.