April 25th - sellwe/Genome-Analysis GitHub Wiki

Decided not to try and make my genome circular as it wont impact downstream processes. Maybe ill do it later just to get a prettier MUMmerplot.

Trying to get artemis to work, was still struggling. Artemis is in bioinfo-tools but I have to download java v. 1.8 for it to work, or use the lab computers (next time).

Or i have to download it again.

For circlator i had to combine my raw data with: cat /home/sebase/Genome-Analysis/data/raw_data/genomic/pacbio/*.subreads.fastq.gz > /home/sebase/Genome-Analysis/data/raw_data/genomic/pacbio/pacbio_combined.fastq.gz

Im currently running the circlator job. I will try to make a new mummerplot next