April 22nd - sellwe/Genome-Analysis GitHub Wiki

I used this reference genome for comparative genomics: https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_900447735.1/

Will need to push: run_mummerplot_e_faecium.sh

in

/home/sebase/Genome-Analysis/code/02_genome_assembly/mummerplot

Still have to push the prokka script after i have checked its quality. Looks good!

More steps for annotation: blast mot ref. kolla canu output för cirkulär

If its not circular it can explain my weird mummerplot

It is not circular as found in the contig.fasta file. Might have to check that out