CNS alignment notes - saalfeldlab/flyem-alignment GitHub Wiki

Notes for alignment of male CNS EM volume to JRC2018M template

Summary

Experiments, data and results are: /nrs/saalfeld/john/flyem_maleBrain

Versions

Second fine-tuning

/nrs/saalfeld/john/flyem_maleBrain/finetune2

A larger (151) set of landmarks. Largely focused on the biggest errors in neuropil boundaries.

First fine-tuning

/nrs/saalfeld/john/flyem_maleBrain/finetune

A small (91) set of landmarks. I was being, only placing correspondences I'm sure about, and trying hard to avoid any substantial deformation.

Automatic

/nrs/saalfeld/john/flyem_maleBrain/regexps/exp0029_t9_0029.sh_20220330165846/result_0029

Chosen because it was the smoothest among several similarly good appearing transformations