HiC Database Site - s-joshid/bioinformatics_projects GitHub Wiki

Background

Please refer to the following repo for the full code. This project was completed with three other classmates as our final project for the BF791 course at Boston University. We had collaborated with the Kohwi lab at Columbia to design the site to fit their needs in analyzing drosophila neurological development. We utilized HTML and Javascript for the front end, and FLASK and Ajax to implement functionality and connection to the SQL database to obtain and display query results. This site allows users to explore and download query results such as:

  • All gene-to-gene contact interactions within a single experiment
  • All gene-to-gene contact interactions within two experiments
  • A particular gene's interactions in a particular experiment
  • A particular gene's interactions across two experiments
  • A particular location's interactions in a particular experiment
  • A particular location's interactions across two experiments

As well as accompanying plots when appropriate. Only members of the lab can access the tab for lab notes and adding or deleting experimental data. As it is no longer available to the public, please see the below link for a demo of the website.

https://drive.google.com/file/d/1DKp1AD3goDffBIloDLpOnwyTYixeOVYX/view