Макс Алексеев - ryavorsky/RuBioMed GitHub Wiki

Associate Professor Department of Mathematics & Computational Biology Institute of George Washington University Computational Biology Institute

Research Interests: Computational Molecular Biology / Bioinformatics, Comparative Genomics, Graph Theory, Combinatorics, Discrete Algorithms, Cryptography.

Brief Biography:

Ph.D. in computer sience, University of California, San Diego, 2007 M.S. (summa cum laude) in mathematics, Lobachevsky State University of Nizhni Novgorod, Russia, 1999 B.S. (summa cum laude) in mathematics, Lobachevsky State University of Nizhni Novgorod, Russia, 1997

Recent publications:

S. Jiang and M. A. Alekseyev. "Shortest DCJ Scenarios and Implicit Transpositions", 2014. (submitted)

N. Alexeev and M. A. Alekseyev. "A Computational Method for the Rate Estimation of Evolutionary Transpositions", 2014. (submitted)

M. A. Alekseyev. "Computing the (number or sum of) inverses of Euler's totient and other multiplicative functions", 2014. (submitted)

P. Avdeyev, S. Jiang, S. Aganezov, F. Hu, and M. A. Alekseyev. "Reconstruction of ancestral genomes in presence of gene gain and loss", 2014. (submitted)

M. A. Alekseyev, M. Basova, and N. Yu. Zolotykh. "On the minimal teaching sets of two-dimensional threshold functions", 2014. (submitted)

S. Aganezov, N. Sitdykova, AGC Consortium, and M. A. Alekseyev. "Scaffold assembly based on genome rearrangement analysis". Proceedings of the 13th Asia-Pacific Bioinformatics Conference (APBC 2015). (in press)

M. A. Alekseyev and T. Berger. "Solving the Tower of Hanoi with Random Moves", The Princeton Guide to Research in Recreational Mathematics, 2014. (in press)

S. Jiang and M. A. Alekseyev. "Linearization of Median Genomes under DCJ". Proceedings of the 14th Workshop on Algorithms in Bioinformatics (WABI 2014), Lecture Notes in Computer Science 8701 (2014), pp. 97-106. doi:10.1007/978-3-662-44753-6_8

M. A. Alekseyev and Sz. Tengely. "On Integral Points on Biquadratic Curves and Near-Multiples of Squares in Lucas Sequences", Journal of Integer Sequences 17(6) (2014), Article 14.6.6.

S. Nurk, A. Bankevich, D. Antipov, A. A. Gurevich, A. Korobeynikov, A. Lapidus, A. D. Prjibelsky, A. Pyshkin,

A. Sirotkin, Y. Sirotkin, R. Stepanauskas, J. S. McLean, R. Lasken, S. R. Clingenpeel, T. Woyke, G. Tesler, M.

A. Alekseyev, and P. A. Pevzner. “Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products”. Journal of Computational Biology 20(10) (2013), 714-737. doi:10.1089/cmb.2013.0084

M. A. Alekseyev. "Problem 3766". Crux Mathematicorum 38(7) (2013), 284–287.

S. K. Pham, D. Antipov, A. Sirotkin, G. Tesler, P. A. Pevzner, and M. A. Alekseyev. "Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly". Journal of Computational Biology 20(4) 2013, 359-371. doi:10.1089/cmb.2012.0098

S. Nurk, A. Bankevich, D. Antipov, A. Gurevich, A. Korobeynikov, A. Lapidus, A. Prjibelsky, A. Pyshkin, A. Sirotkin, Y. Sirotkin, R. Stepanauskas, J. McLean, R. Lasken, S. R. Clingenpeel, T. Woyke, G. Tesler, M. A. Alekseyev, and P. A. Pevzner. "Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads". Proceedings of the 17th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2013), Lecture Notes in Computer Science 7821 (2013), pp. 158–170. doi:10.1007/978-3-642-37195-0_13

S. I. Nikolenko, A. Korobeynikov, and M. A. Alekseyev. "BayesHammer: Bayesian clustering for error correction in single-cell sequencing". Proceedings of the 11th Asia Pacific Bioinformatics Conference (APBC 2013), BMC Genomics 14(Suppl 1) (2013), pp. S7. doi:10.1186/1471-2164-14-S1-S7