SNP Calling for EPP622 Exam 2 SET‐UP - rsalani13/EPP622-2026-SNPCalling GitHub Wiki

EPP622 SNP Calling - Exam 2

Name: Rachel Salani

Server: sphinx

Repository URL: -

Setup

Create exam directory and copy raw data files:

mkdir exam2
cd exam2/
mkdir analyses
mkdir rawdata
cd rawdata

#copy raw data files
cp -r /lustre/isaac24/proj/UTK0505/test2/* .

cd ../

#activate conda
conda activate snps

Note: if you see ----------------------------, that is being used to show that the code within is part of a script, not command line