FSL

FSL is a software for the analysis of fMRI, MRI and DTI brain imaging data. It is widely used in the scientific community. On this page, we will teach you step-by-step how to perform batch processing in the ARC cluster of neuroimages using FSL. The main steps are:

1. Define a SLURM script with the compute requirements and the FSL pipeline that you want to use to process your images;
2. Define a text file that lists the paths (path + file name) to every image you want to process, each line of the text file should contain an image path;