Phylogenetic - polizzilab/software-wiki GitHub Wiki
Introduction
The folder is created by Jerry. Jerry will upload some common programs for building phylogenetic trees and ancestral sequence reconstructions.
Phylogenetic
051823 update: RaxML
031324 update: [FastTree] (http://www.microbesonline.org/fasttree/). Installed in /nfs/polizzi/shared/programs/phylogenetic/FastTree. Run it by /nfs/polizzi/shared/programs/phylogenetic/FastTree {protein_alignment}.fasta > {protein_alignment}.tre
Ancestral Sequence Reconstruction
candidate programs: