Databases - polizzilab/software-wiki GitHub Wiki

Workstation

  • vdM database

    • Found under /nfs/polizzi/shared/databases/combs/vdMs/ and maintained by Jeffrey
    • last updated 04/21/23 with water-mediated vdMs

  • Qbits 2p8A database

  • PDBBind-refined

  • propedia

  • TERMs

    • Found under /nfs/polizzi/shared/databases/TERMs and maintained by Jeffrey
    • only first 1000 TERMs are downloaded
    • last updated 04/12/23

O2

  • vdM database
    • Found under /n/data1/hms/bcmp/polizzi/lab/databases/combs/vdMs/ and maintained by Jeffrey
    • last updated 04/21/23 with water-mediated vdMs
  • Qbits 2p8A database
  • PDBBind