Singularity container from Docker container - pnlbwh/pnlpipe-containers GitHub Wiki

The recommended way to get our Singularity container is noted here. You may also build the container bootstrapping around our docker container:

export SINGULARITY_TMPDIR=$HOME
singularity build pnlpipe.sif docker://tbillah/pnlpipe:latest

But then you would have to source the software environment every time you use the container:

singularity shell pnlpipe.sif

singularity> source /home/pnlbwh/.bashrc