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MCTB Symposium 2019: Single Cell Hands on Workshop

Installation instructions

Please follow these instructions to ensure you and your computer are rady for the workshop:

Data and code for workshop

Please download the following zip file (available noon on Thursday 4/4/2019):

  • Data and code for workshop (.zip) - This will open up the zip file in GoogleDrive. To download please click the download button which looks like a downward facing arrow on the upper right of the webpage. Then click the "Download anyway button".

Unzip the file into a folder where you want to run your analysis. It contains a folder that houses all the data and code for our workshop on Friday.

R Resources

In case you need to brush up on your R skills here are some good resources:

Workshop with Seurat agenda (4:30 - 8:30):

The hands-on single cell RNA-seq (scRNA-seq) analysis training session will continue following the symposium in the same room.

Short intro to cell types we expect to see in human lung samples used in the workshop.