The configure smrtanalysis.sh script fails - pb-dyim/SMRT-Analysis GitHub Wiki

Make sure that all required libraries are installed.

Ubuntu 10.04 +

apt-get install mysql-server libssl0.9.8 libgfortran3 liblapack3gf libxml-parser-perl

CentOS 5.6 +

yum install mysql-server perl-XML-Parser.x86_64 libgfortran openssl openssl098e

CentOS 6 +

yum install mysql-server perl-XML-Parser.x86_64 libgfortran compat-libgfortran-41 openssl openssl098e

Make sure the system user executing the script is either the smrtanalysis user, or is superuser.

The user which SMRT Analysis will be running under will need to be created, as well as a MySQL user with elevated privileges for creating the smrtportal schema.

SEE ALSO: [SMRT Analysis Software Installation]