Step 5, Option 2: Run the Upgrade Script - pb-dyim/SMRT-Analysis GitHub Wiki

If you are upgrading from v1.3.3 to v1.4.0 and want to preserve SMRT Cells, jobs, and users from a previous installation:

Run upgrade_and_configure_smrtanalysis.sh to update the database schema and the reference repository entries:

cd $SEYMOUR_HOME/etc/scripts/postinstall
./upgrade_and_configure_smrtanalysis.sh

Skip setting up the services: (These should already exist from the previous installation.)

Now creating symbolic links in /etc/init.d. Continue? [Y/n] n

The upgrade process will port over the configuration settings from the previous version.