SMRT Portal jobs are being submitted as root - pb-dyim/SMRT-Analysis GitHub Wiki

Only happens when users are not following all the steps of installation in the manual.

smrtanalysis@server$ qstat -u \*
job-ID  prior   name       user         state submit/start at     queue                          slots ja-task-ID
-----------------------------------------------------------------------------------------------------------------        
4298052 0.47166 S52657     root         qw    12/09/2012 22:12:57                                    1

You should go back to replace commands inside /etc/init.d/tomcatd from sh $CATALINA_HOME/bin/startup.sh to su -c "sh $CATALINA_HOME/bin/startup.sh" smrtanalysis (Don't forget to use root to do /etc/init.d/tomcatd stop, qdel the jobs and /etc/init.d/tomcatd start as well.)