SMRT Pipe tools - pb-dyim/SMRT-Analysis GitHub Wiki

Tools are programs that run as part of SMRT Pipe. A module, such as P_Mapping, can call several tools (such as the mapping tools summarizeCoverage.py or compareSequences.py) to actually perform the underlying processing.

All the tools are located at $SEYMOUR_HOME/analysis/bin.

Use the --help option to see usage information for each tool. (Some tools are undocumented.)