Log File Locations - pb-dyim/SMRT-Analysis GitHub Wiki
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| Log Name | Location | Path | Purpose |
|---|---|---|---|
| Homer | instrument: pap01 |
/pacbio/log/homer/InstrumentControl.log.<date> |
Records instrument control and workflow events and issues. |
| Homer-mono | instrument: pap01 | /pacbio/log/homer/homer-mono.<date> |
Records mono output. Mono allows .NET code to run on linux. |
| Otto | instrument: NRT | /pacbio/log/otto/ottolog-<date> |
Records file server and movie acquisition events and issues. |
| Bart | instrument: pap01 | /pacbio/log/bart/Log_<date> |
Records any network connection events to the instrument such as calculator, secondary analysis pings, and instrument control web services requests. |
| Pipeline | instrument: pap01 | /data/imports/pap0*/spool/Analysis_Results/<movie_context>:.log |
Records primary analysis trc, pls, and bas file creation events and issues. |
| Transfer | instrument: pap02-04 | /pacbio/log/oixfer/oixfer-<date>.log |
Records any data transfer attempts and the result of that attempt. |
| RS Touch | instrument: pap01 | /data/logxfer/guipc/Users/pbi/AppData/ |
Records any events and issues relating to RS Touch. |
| RS Remote | Windows 7 Machine | C:\Users\<username>\AppData\Roaming\Pacific
Biosciences\RS Remote |
Records any events and issues relating to RS Remote. |
| RS Remote | Windows XP Machine | C:\Documents and Settings\<user name> |
Records any events and issues relating to RS Remote. |
| SMRT Portal | SMRT Analysis Linux Server |
$SEYMOUR_HOME/common/log/smrtportal/ |
Records any SMRT Portal web GUI events and issues. |
|
Kodos |
SMRT Analysis Linux Server | $SEYMOUR_HOME/common/log/autoDaemon/ |
Records any automatic secondary analysis events and issues. |
|
Tomcat |
SMRT Analysis Web Server | $SEYMOUR_HOME/redist/tomcat/logs/ |
Records web server events and issues. |
| Reference Uploader | SMRT Analysis Linux Server | $SEYMOUR_HOME/common/log/referenceUploader/ |
Records any events and issues when a reference is imported to SMRT Portal. |
|
SMRT View |
SMRT Analysis Linux Server | $SEYMOUR_HOME/common/log/smrtview/ |
Records any SMRT View Java events and issues. |
| SMRT Pipe job | SMRT Analysis Linux Server | $SEYMOUR_HOME/common/jobs/<jobid_prefix>/<jobid>/log/smrtpipe.log |
Records all analysis events and issues when running a SMRT Pipe job. |
| Distributed SMRT Pipe job | SMRT Analysis Linux child node | *Look for tmp directory in smrtpipe.log. It should look something like /tmp/tmp6w8WPk/tmpdvRNDh/<job>_err |
Records all analysis events and issues that happen
when the job is spawned off to a child node. |