Customizing a spec file using a setting not exposed in the UI - pb-dyim/SMRT-Analysis GitHub Wiki

To customize a Celera Assembler spec file using a setting not exposed in the UI:

1. Run a job using the Celera Assembler workflow.
2. Download the spec file or copy from the job data file; both portions of the workflow generate their own spec file.
3. Edit the spec file and place in a location that is visible to the compute nodes.
4. Create a new Celera Assembler job using the new spec file(s) in the protocol settings.