Automatic secondary analysis processing does not work - pb-dyim/SMRT-Analysis GitHub Wiki
Use the following commands to stop and then restart kodos:
sudo $SEYMOUR_HOME/etc/scripts/postinstall/kodosd stop
sudo $SEYMOUR_HOME/etc/scripts/postinstall/kodosd start
See the document Checklist: Troubleshooting Automatic Secondary Analysis for more information.