Central pathways - paumayell/EvoMining GitHub Wiki

#Central pathway database construction.

Central paths headers

SUBSYSTEM|Family number|Function_querynumber|Organism or comment

SUBSYSTEM

Defines grey lines. Each subsystem may have many Family numbers

Family number

Defines columns on heatplot Each family may have many queries, only one hit query relationship will be shown at the heatplot i.e. only non redundant hits will be considered.

Function_querynumber

Function explains the function of the family.
querynumber a unique consecutive identifier.

Organism or comment

Organism name or comment.

##Example

3PGA_AMINOACIDS|1|Phosphoglyceratedehydrogenase1|Cglu

To do
[ ] Construct a small test Database with Streptomyces and Corynebacyerium
[ ] Test if a family uses all queries and not just the first one.