• Java 7 (minimum)
• Java 8 (compatible)

These have been exchanged on the mailing list or kindly provided by other users. Find them here.

(This list comes from updating the test package for 3.5 to work with 4.0. It is likely to cover most of the compilation errors that typical client code might see)

• org.coode.owlapi.obo.parser.OBOOntologyFormat renamed to OBODocumentFormat.
• org.coode.owlapi.turtle.TurtleOntologyFormat renamed to TurtleDocumentFormat.
• org.semanticweb.owlapi.io.OWLFunctionalSyntaxOntologyFormat renamed to FunctionalSyntaxDocumentFormat.
• org.semanticweb.owlapi.io.OWLXMLOntologyFormat renamed to OWLXMLDocumentFormat.
• org.semanticweb.owlapi.io.RDFXMLOntologyFormat renamed to RDFXMLDocumentFormat.
• org.semanticweb.owlapi.model.OWLOntologyFormat renamed to OWLDocumentFormat.
• ontology.getOntologyID().getOntologyIRI() returns an Optional now; beware of using it in string concatenations without adding a get() call - the IRIs created will be different.
• cls.getAnnotationAssertionAxioms(ont); change to EntitySearcher.getAnnotationAssertionAxioms(cls, ont);
• cls.getAnnotations(ont); change to EntitySearcher.getAnnotations(cls, ont);
• ont.containsAxiom(axiom, false); change to EntitySearcher.containsAxiom(axiom, ont, false);
• ind.getDataPropertyValues(property, ont); change to EntitySearcher.getDataPropertyValues(ind, property, ont);
• ind.hasObjectPropertyValue(property, value, ont); change to EntitySearcher.hasObjectPropertyValue(ind, property, value, ont);
• ind.hasNegativeObjectPropertyValue(property, value, ont);change toEntitySearcher.hasNegativeObjectPropertyValue(ind, property, value, ont);`
• ind.hasObjectPropertyValue(property, value, ont); change to EntitySearcher.hasObjectPropertyValue(ind, property, value, ont);
• ind.getTypes(ont); change to EntitySearcher.getTypes(ind, ont);
• ind.hasDataPropertyValue(property, value, ont); change to EntitySearcher.hasDataPropertyValue(ind, property, value, ont);
• ind.getObjectPropertyValues(property, ont); change to EntitySearcher.getObjectPropertyValues(ind, property, ont);
• ind.getDataPropertyValues(property, ont); change to EntitySearcher.getDataPropertyValues(ind, property, ont);
• ind.getNegativeDataPropertyValues(property, ont); change to EntitySearcher.getNegativeDataPropertyValues(ind, property, ont);
• ind.hasNegativeDataPropertyValue(property, literal, ont); change to EntitySearcher.hasNegativeDataPropertyValue(ind, property, literal, ont);
• ind.getSameIndividuals(ont); change to EntitySearcher.getSameIndividuals(ind, ont);
• ind.getDifferentIndividuals(ont); change to EntitySearcher.getDifferentIndividuals(ind, ont);
• entity.isDefined(ont); change to EntitySearcher.isDefined(entity, ont);
• cls.getSuperClasses(ont); change to EntitySearcher.getSuperClasses(cls, ont);
• cls.getSubClasses(ont); change to EntitySearcher.getSubClasses(cls, ont);
• cls.getDisjointClasses(ont); change to EntitySearcher.getDisjointClasses(cls, ont);
• cls.getEquivalentClasses(ont); change to EntitySearcher.getEquivalentClasses(cls, ont);
• cls.getIndividuals(ont); change to EntitySearcher.getIndividuals(cls, ont);
• entity.getReferencingAxioms(ont, false); change to EntitySearcher.getReferencingAxioms(entity, ont);
• property.getDisjointProperties(ont); change to EntitySearcher.getDisjointProperties(property, ont);
• property.getSubProperties(ont); change to EntitySearcher.getSubProperties(property, ont);
• property.getEquivalentProperties(ont); change to EntitySearcher.getEquivalentProperties(property, ont);
• property.getSuperProperties(ont); change to EntitySearcher.getSuperProperties(property, ont);
• property.getDomains(ont); change to EntitySearcher.getDomains(property, ont);
• property.getRanges(ont); change to EntitySearcher.getRanges(property, ont);
• property.isFunctional(ont); change to EntitySearcher.isFunctional(property, ont);
• Map<OWLDataPropertyExpression, Set<OWLLiteral>> result = ind.getDataPropertyValues(ont); change to Multimap<OWLDataPropertyExpression, OWLLiteral> result = EntitySearcher.getDataPropertyValues(ind, ont);
• entity.getAnnotationAssertionAxioms(ont); change to EntitySearcher.getAnnotationAssertionAxioms( entity,ont);
• ont.containsAxiomIgnoreAnnotations(axiom, false); change to EntitySearcher.containsAxiomIgnoreAnnotations(axiom, ont, false);
• property.isAsymmetric(ont); change to EntitySearcher.isAsymmetric(property, ont);
• property.isInverseFunctional(ont); change to EntitySearcher.isInverseFunctional(property, ont);
• property.isSymmetric(ont); change to EntitySearcher.isSymmetric(property, ont);
• property.isReflexive(ont); change to EntitySearcher.isReflexive(property, ont);
• property.isIrreflexive(ont); change to EntitySearcher.isIrreflexive(property, ont);
• property.isTransitive(ont); change to EntitySearcher.isTransitive(property, ont);
• property.getInverses(ont); change to EntitySearcher.getInverses(property, ont);
• property.isFunctional(ont); change to EntitySearcher.isFunctional(property, ont);

Package change: from de.uulm.ecs.ai.owlapi.krssparser to de.uulm.ecs.ai.owlapi.krssparser

class visibility: org.semanticweb.owlapi.krss2.parser.KRSS2OWLParser is the main public class. All other clases are package protected.

Package change: from de.uulm.ecs.ai.owlapi.krssrenderer to org.semanticweb.owlapi.krss2.renderer

method change: KRSS2ObjectRenderer: dropped manager

method visibility: KRSS2ObjectRenderer::write(): protected

method visibility: KRSS2OWLObjectRenderer::write(): protected

method change: KRSS2OWLSyntaxRenderer: dropped manager

method deleted: KRSS2OWLSyntaxRenderer::setOWLOntologyManager()

method change: KRSS2SyntaxRenderer: dropped manager

method deleted: KRSS2SyntaxRenderer::setOWLOntologyManager()

method change: KRSSObjectRenderer: dropped manager

method change: KRSSSyntaxRenderer: dropped manager

Package change: from org.coode.owl.krssparser to org.semanticweb.owlapi.krss1.parser

class visibility: org.semanticweb.owlapi.krss1.parser.KRSSOWLParser main public class

Package change: from org.coode.owlapi.functionalparser to org.semanticweb.owlapi.functional.parser

class visibility: org.semanticweb.owlapi.functional.parser.OWLFunctionalSyntaxOWLParser.class main public class

Package change: from org.coode.owlapi.functionalrenderer to org.semanticweb.owlapi.functional.renderer

method change: OWLFunctionalSyntaxRenderer: dropped manager

method deleted: OWLFunctionalSyntaxRenderer::setOWLOntologyManager()

class refactored: OWLObjectRenderer to FunctionalSyntaxObjectRenderer

method visibility: varios write methods in FunctionalSyntaxObjectRenderer are now protected.

Package change: from org.coode.owlapi.latex to org.semanticweb.owlapi.latex.renderer

method change: LatexRenderer : dropped manager

method deleted: LatexRenderer::setOWLOntologyManager()

Package change: from org.coode.owlapi.manchesterowlsyntax to org.semanticweb.owlapi.mansyntax.parser

class visibility: org.semanticweb.owlapi.mansyntax.parser.ManchesterOWLSyntaxOntologyParser main public class

utils: org.semanticweb.owlapi.util.mansyntax.ManchesterOWLSyntaxParser Manchester parser interface

method removed: ManchesterOWLSyntaxParser::parseClassFrameEOF()

method removed: ManchesterOWLSyntaxParser::parseConstant(): use parseLiteral(null)

method arguments: ManchesterOWLSyntaxParser::parseClassExpressionList() : boolean removed

method removed: ManchesterOWLSyntaxParser::parseClassAxiom() : use parseAxiom()

Package change: from org.coode.owlapi.obo.parser to org.obolibrary.oboformat.parser

class visibility: org.obolibrary.oboformat.parser.OBOFormatParser main public class

Package deleted: org.coode.owlapi.obo.renderer. Use the new obo package org.obolibrary.oboformat

Package change: from org.coode.owlapi.oboformat to org.obolibrary.oboformat.parser

class visibility: org.obolibrary.oboformat.parser.OBOFormatParser main public class

Package change: from org.coode.owlapi.owlxml.renderer to org.semanticweb.owlapi.owlxml.renderer

method modified: OWLXMLRenderer : manager dropped

method deleted: OWLXMLRenderer::setOntologyManager()

Package change: from org.coode.owlapi.owlxmlparser to org.semanticweb.owlapi.owlxml.parser

class visibility: OWLXMLParser main public class

Package change: from org.coode.owlapi.rdf.model to org.semanticweb.owlapi.io

Package change: from org.coode.owlapi.rdf.rdfxml to org.semanticweb.owlapi.rdf.rdfxml.renderer

method change: RDFXMLNamespaceManager : dropped manager

method change: RDFXMLNamespaceManager::getPrefixes() : return type is Iterable

method change: RDFXMLNamespaceManager::getNamespaces() : return type is Iterable

method deleted: RDFXMLNamespaceManager::getPrefixNamespaceMap()

method change: RDFXMLRenderer : dropped manager

method deleted: RDFXMLRenderer::getOntology()

method deleted: RDFXMLRenderer::getGraph()

Package change: from org.coode.owlapi.rdf.renderer to org.semanticweb.owlapi.rdf

method deleted : RDFRendererBase::getOntology()

method deleted : RDFRendererBase::getGraph()

Package change: from org.coode.owlapi.rdfxml.parser to org.semanticweb.owlapi.rdf.rdfxml.parser

class visibility: RDFXMLParser main public class

Package change: from org.semanticweb.owlapi.io.RDFOntologyFormat to org.semanticweb.owlapi.formats.RDFOntologyFormat

Package change: org.coode.owlapi.turtle to org.semanticweb.owlapi.rdf.turtle.renderer

Package change: All OWLOntologyFormats to org.semanticweb.owlapi.formats

method arguments: TurtleRenderer : dropped manager

method removed: TurtleRenderer::getOntology()

method removed: TurtleRenderer::getGraph()

class refactored: RDFResourceNode to RDFResource

Package change: org.coode.string to org.semanticweb.owlapi.util

Package change: from org.coode.xml to org.semanticweb.owlapi.rdf.rdfxml.renderer

method change: OWLOntologyXMLNamespaceManager : dropped manager, added format

method deleted: XMLWriterFactory::getInstance() : all methods are static

method refactored: XMLWriterImpl::getXMLBaseAsURI() : getXMLBase()

method change: AbstractMacroExpansionVisitor : dropped logger

method change: ManchesterSyntaxTool : dropped boolean

Package change: from org.semanticweb.owlapi.vocab.PrefixOWLOntologyFormat to org.semanticweb.owlapi.formats.PrefixOWLOntologyFormat

method change: XMLUtils : private. All methods are static.

class removed: IOProperties : all settings are on OWLOntologyLoaderConfiguration

method change: OWLOntologyDocumentSourceBase::getNextDocumentIRI() : added string argument

class removed: DefaultOntologyFormat

method change: UnparsableOntologyException::isIncludeStackTraceInMessage() :setting moved to OWLOntologyLoaderConfiguration

method change: OWLOntologyDocumentSource constructors : added nullable format and MIME type arguments

class removed: OWLParserFactoryRegistry : Parsers are managed through Guice modules and class path loading

class removed: OWLParserIOException

class removed: OWLParserSAXException

class removed: OWLParserSAXException

class refactored: RDFResource : abstract

method change: RDFParserMetaData : ArrayListMultimap<IRI, Class<?>> added

method change: RDFLiteral::getLiteral() : getLexicalValue()

method removed: OWLRenderer::setOWLOntologyManager()

method changed: OWLParserFactory::createParser() : dropped manager

method changed: AbstractOWLMetric : manager dropped, OWLOntology added

method changed: AverageAssertedNamedSuperclassCount : manager dropped, OWLOntology added

method changed: AxiomCount : manager dropped, OWLOntology added

method changed: AxiomCountMetric : manager dropped, OWLOntology added

method visibility: AxiomTypeCountMetricFactory : private. Use Factory method.

method changed: AxiomTypeCountMetricFactory::createMetrics() : manager dropped, OWLOntology added

method changed: AxiomTypeMetric : manager dropped, OWLOntology added

method changed: DLExpressivity : manager dropped, OWLOntology added

method changed: DoubleValuedMetric : manager dropped, OWLOntology added

method changed: GCICount : manager dropped, OWLOntology added

method changed: HiddenGCICount : manager dropped, OWLOntology added

method changed: IntegerValuedMetric : manager dropped, OWLOntology added

method changed: ImportClosureSize : manager dropped, OWLOntology added

method changed: LogicalAxiomCount : manager dropped, OWLOntology added

method changed: MaximumNumberOfNamedSuperclasses : manager dropped, OWLOntology added

method changed: NumberOfClassesWithMultipleInheritance : manager dropped, OWLOntology added

method changed: ObjectCountMetric : manager dropped, OWLOntology added

method changed: ReferencedClassCount : manager dropped, OWLOntology added

method changed: ReferencedDataPropertyCount : manager dropped, OWLOntology added

method changed: UnsatisfiableClassCountMetric : manager dropped

method changed: ReferencedIndividualCount : manager dropped, OWLOntology added

method changed: ReferencedObjectPropertyCount : manager dropped, OWLOntology added

method change: OWLOntologyRenameException : from OWLOntologyChange to OWLOntologyChangeData

class deleted: OWLOntologyManagerProperties

method change: OWLOntologyLoaderConfiguration::getIgnoredImports() : isIgnoredImport()

method change: OWLOntologyLoaderConfiguration::setSilentMissingImportsHandling() : setMissingImportsHandlingStrategy()

method change: OWLOntologyLoaderConfiguration::isSilentMissingImportsHandling() : gettMissingImportsHandlingStrategy()

method refactored: OWLOntologyManager::add/remove/getOntologyFactories() : managed through a PriorityCollection and get/setOntologyFactories()

method refactored: OWLOntologyManager::add/remove/getOntologyStorers() : managed through a PriorityCollection and get/setOntologyStorers()

method refactored: OWLOntologyManager::add/remove/getIRIMappers() : managed through a PriorityCollection and get/setIRIMappers()

method refactored: IRI::getFragment() : use IRI::getRemainder(), IRI::getShortForm(), IRI::prefixedBy()

method arguments: OWLDataFactory::getSWRLRule() : dropped deprecated id

method deleted: IRI::getStart() : use getNamespace()

method refactored: OWLCardinalityRestriction::getProperty() : pushed down to data and object restrictions

method refactored: OWLCardinalityRestriction::getValue() : use getFiller()

method refactored: OWLOntology::applyChange() : return type is no longer a list but an AppliedChange value.

Package change: from org.semanticweb.owlapi.profiles to org.semanticweb.owlapi.profiles.violations

interface removed: OWL2DLProfileViolation

interface removed: OWL2ELProfileViolationVisitor

interface removed: OWL2ProfileViolationVisitor

interface removed: OWL2QLProfileViolationVisitor

interface removed: OWL2RLProfileViolationVisitor

method changed: OWLProfileViolation::getDocumetIRI() to getOntologyID()

method removed: OWLProfileViolation::getImportsClosure()

generics: OWLProfileViolation is now generic

method changed: DatatypeIRIAlsoUsedAsClassIRI::getIRI() : getExpression()

method changed: UseOfNonSimplePropertyInObjectHasSelf::getOWLObjectHasSelf() : getExpression()

method changed: UseOfNonSubClassExpression::getOWLClassExpression() : getExpression()

method changed: UseOfNonSuperClassExpression::getOWLClassExpression() : getExpression()

method changed: UseOfObjectOneOfWithMultipleIndividuals::getOWLObjectOneOf() : getExpression()

method changed: UseOfObjectOneOfWithMultipleIndividuals::getIRI() : getExpression()

method changed: UseOfObjectPropertyInverse::getOWLPropertyExpression() : getExpression()

method changed: UseOfPropertyInChainCausesCycle::getOWLObjectProperty() : getExpression()

method changed: UseOfReservedVocabularyForAnnotationPropertyIRI::getOWLAnnotationProperty() : getExpression()

method changed: UseOfReservedVocabularyForClassIRI::getOWLClass() : getExpression()

method changed: UseOfReservedVocabularyForDataPropertyIRI::getOWLDataProperty() : getExpression()

method changed: UseOfReservedVocabularyForIndividualIRI::getOWLNamedIndividual() : getExpression()

method changed: UseOfReservedVocabularyForObjectPropertyIRI::getOWLObjectProperty() : getExpression()

method changed: UseOfUndeclaredObjectProperty::getOWLObjectProperty() : getExpression()

method changed: UseOfNonSimplePropertyInDisjointPropertiesAxiom::getOWLObjectProperty() : getExpression()

method changed: UseOfPropertyInChainCausesCycle::getOWLObjectProperty() : getExpression()

method changed: UseOfUndeclaredDatatype::getDatatype() : getExpression()

method changed: UseOfUnknownDatatype::getDatatype() : getExpression()

method changed: UseOfUndeclaredAnnotationProperty::getOWLAnnotation() : getExpression()

method changed: UseOfUndeclaredAnnotationProperty::getOWLAnnotationProperty() : getExpression()

method changed: UseOfUndeclaredClass::getOWLClass() : getExpression()

method changed: UseOfNonAtomicClassExpression::getOWLClassExpression() : getExpression()

method changed: UseOfNonEquivalentClassExpression::getOWLClassExpression() : getExpression()

method changed: UseOfIllegalClassExpression::getOWLClassExpression() : getExpression()

method changed: UseOfDefinedDatatypeInDatatypeRestriction::getOWLDatatypeRestriction() : getExpression()

method changed: UseOfNonSimplePropertyInCardinalityRestriction::getOWLCardinalityRestriction() : getExpression()

method changed: UseOfUndeclaredDataProperty::getOWLDataProperty() : getExpression()

method changed: UseOfIllegalDataRange::getOWLDataRange() : getExpression()

method changed: UseOfIllegalFacetRestriction::getFacet() : getExpression()

method deleted: UseOfIllegalFacetRestriction::getFacet()

method changed: LexicalNotInLexicalSpace::getLiteral() : getExpression()

method changed: UseOfAnonymousIndividual::getOWLAnonymousIndividual() : getExpression()

method changed: UseOfDataOneOfWithMultipleLiterals::getOWLDataRange() : getExpression()

method deleted: UseOfDataOneOfWithMultipleLiterals::getDataOneOf()

method changed: LastPropertyInChainNotInImposedRange::getOWLSubPropertyChainOfAxiom() : getAxiom()

class changed: OWLProfileViolation is abstract

Package change: from org.semanticweb.owlapi.rdf.syntax to org.semanticweb.owlapi.rdf.rdfxml.parser

Package change: from org.semanticweb.owlapi.rdf.util to org.semanticweb.owlapi.rdf.rdfxml.parser

method change: NodeFactory : private. All methods are static.

class removed: MultiMap : use Guava Multimap

class removed: OWLDataUtil

class refactored: OWLOntologyChangeVisitorAdapterEx to OWLOntologyChangeVisitorExAdapter

method deleted: OWLOntologyChangeVisitorExAdapter(no args)

class deleted: OWLAxiomTypeProcessor : just use the type already on the axiom

method deleted: EscapeUtils : all methods are static

method changed: ImportsStructureEntitySorter : dropped manager

method changed: ImportsStructureObjectSorter : dropped manager

method changed: DefaultPrefixManager : changed to nullable parameers

method changed: InferredAxiomGenerator::createAxioms() : manager changed to OWLDataFactory

method changed: OWLEntityRemover : dropped manager

class refactored: OWLOntologyURIChanger : OWLOntologyIRIChanger

class refactored: NamespaceUtil : methods to split namespace and local name removed, use IRI methods

method changed: ImportsStructureObjectSorter : dropped manager

method changed: DefaultPRefixManager::addPrefixes() : copyPrefixesFrom()

method changed: AnnotationValueShortFormProvider : OWLAnnotationValueVisitorEx removed

method visibility: CachingBidirectionalShortFormProvider::remove() : protected

method visibility: CachingBidirectionalShortFormProvider::rebuild() : protected

method deleted: CachingBidirectionalShortFormProvider::update()

Package change: org.semanticweb.owlapi.vocab.PrefixOWLOntologyFormat to org.semanticweb.owlapi.formats.PrefixOWLOntologyFormat

method deleted: DublinCoreVocabulary::getURI()

method deleted: OWL2Datatype::getURI()

method deleted: OWLRDFVocabulary::getURI()

method deleted: OWLXMLVocabulary::getURI()

method deleted: SWRLVocabulary::getURI()

method deleted: SKOSVocabulary::getURI()

method changed: PrefixOWLOntologyFormat::clearPrefixes() : clear()

method changed: OWL2Datatype::getShortName() : getShortForm()

method changed: OWLRDFVocabulary::getShortName() : getShortForm()

method changed: OWLXMLVocabulary::getShortName() : getShortForm()

method changed: SWRLVocabulary::getShortName() : getShortForm()

method changed: SKOSVocabulary::getShortName() : getShortForm()

method changed: OWLFacet::getShortName() : getShortForm()

method changed: DublinCoreVocabulary::getQName() : getPrefixedName()

method changed: SWRLBuiltInsVocabulary::getShortName() : getShortForm()

method changed: SWRLBuiltInsVocabulary::getArity() : getMinArity(), getMaxArity()

method changed: SWRLBuiltInsVocabulary::getShortName() : getShortForm()

Package change: from org.semanticweb.owlapi to org.semanticweb.owlapi.change

method changed: AmalgamateSubClassAxioms : arguments swapped

method changed: MakePrimitiveSubClassesMutuallyDisjoint : set of OWLOntology removed

method changed: ShortForm2AnnotationGenerator : add OWLDataFactory

Package change: from uk.ac.manchester.cs.bhig.util to uk.ac.manchester.cs.owl.explanation.ordering

method removed: MutableTree::replace(MutableTree) : unused

method removed: MutableTree::getSize() : unused

method removed: MutableTree::setParent(MutableTree) : unused

method removed: MutableTree::addChild(MutableTree, Object) : unused

method removed: MutableTree::getEdge(Tree) : unused

method removed: Tree::getEdge(Tree) : unused

method removed: MutableTree::clearChildren() : unused

method removed: MutableTree::getMaxDepth() : unused

class removed: DefaultExplanationOrderer : use ExplanationOrdererImpl

Package change: from uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer to org.semanticweb.owlapi.mansyntax.renderer

method visibility: AbstractRenderer : protected

method visibility: AbstractRenderer::flush() : protected

method visibility: AbstractRenderer::setUseTabbing() : protected

method visibility: AbstractRenderer::setUseWrapping() : protected

method visibility: AbstractRenderer::isUseWrapping() : protected

method visibility: AbstractRenderer::isUseTabbing() : protected

method visibility: AbstractRenderer : protected

class visibility: SectionMap : private

method arguments: ManchesterOWLSyntaxFrameRenderer : dropped manager, dropped variants

method arguments: ManchesterOWLSyntaxOntologyStorer::storeOntology() : dropped manager from all variants

method arguments: ManchesterOWLSyntaxPrefixNameShortFormProvider : dropped manager

method removed: ManchesterOWLSyntaxPrefixNameShortFormProvider::getPrefixManager() : use methods to access prefixes directly

method arguments: ManchesterOWLSyntaxRenderer : dropped manager

method removed: ManchesterOWLSyntaxRenderer::setOWLOntologyManager(OWLOntologyManager) : use OWLOntology manager

method arguments: ManchesterOWLSyntaxFrameRenderer::writeSection() : SectionMap to Collection

method removed: ManchesterOWLSyntaxFrameRenderer::getOntologies() : SectionMap to Collection

Package change: from uk.ac.manchester.cs.owl.owlapi.turtle to org.semanticweb.owlapi.rdf.turtle.parser

class visibility: ConsoleTripleHandler : package

class visibility: JavaCharStream : package

Package change: uk.ac.manchester.cs.BOMSafeJavaCharStream to org.semanticweb.owlapi.BOMSafeJavaCharStream

method arguments: TripleHandler::handleBaseDirective() : from String to IRI

method arguments: OWLRDFConsumerAdapter : dropped manager, dropped anonymous node checker

method visibility: OWLRDFConsumerAdapter::getConfiguration() : protected

class visibility: ParseException : package

class visibility: TurtleParserTokenManager : package

class visibility: TurtleParserConstants : package

class visibility: TurtleParserException : package

class visibility: TurtleParser : package

class visibility: Token : package

class visibility: TokenMgrError : package

method visibility: OWLRDFConsumerAdapter::getConfiguration() : protected

method visibility: OWLRDFConsumerAdapter::addTriple() : protected

method visibility: OWLRDFConsumerAdapter::addFirst() : protected

method visibility: OWLRDFConsumerAdapter::translateAnnotations() : protected

method visibility: OWLRDFConsumerAdapter::addOntology() : protected

method visibility: OWLRDFConsumerAdapter::getResourceObject() : protected

method visibility: OWLRDFConsumerAdapter::getLiteralObject() : protected

method visibility: OWLRDFConsumerAdapter::isDataRange() : protected

method visibility: OWLRDFConsumerAdapter::translateDataRange() : protected

method visibility: OWLRDFConsumerAdapter::translateToDataRangeSet() : protected

method visibility: OWLRDFConsumerAdapter::translateToConstantSet() : protected

method removed: OWLRDFConsumerAdapter::addModelAttribte()

method removed: OWLRDFConsumerAdapter::handle()

method visibility: OWLRDFConsumerAdapter::importsClosureChanged() : protected

method visibility: OWLRDFConsumerAdapter::setIRIProvider() : protected

method visibility: OWLRDFConsumerAdapter::setPendingAnnotations() : protected

method visibility: OWLRDFConsumerAdapter::isTriplePresent() : protected

method visibility: OWLRDFConsumerAdapter::translateIndividual() : protected

method visibility: OWLRDFConsumerAdapter::getSynonym() : protected

method visibility: OWLRDFConsumerAdapter::translateDataPropertyExpression() : protected

method visibility: OWLRDFConsumerAdapter::translateObjectPropertyExpression() : protected

method visibility: OWLRDFConsumerAdapter::getPredicatesBySubject() : protected

method visibility: OWLRDFConsumerAdapter::getResourceObjects() : protected

method visibility: OWLRDFConsumerAdapter::getLiteralObjects() : protected

method visibility: OWLRDFConsumerAdapter::hasPredicate() : protected

method visibility: OWLRDFConsumerAdapter::addRest() : protected

method visibility: OWLRDFConsumerAdapter::getFirstResource() : protected

method visibility: OWLRDFConsumerAdapter::getFirstLiteral() : protected

method visibility: OWLRDFConsumerAdapter::getRest() : protected

method visibility: OWLRDFConsumerAdapter::isAxiom() : protected

method visibility: OWLRDFConsumerAdapter::getOntologies() : protected

method visibility: OWLRDFConsumerAdapter::addAxiom() : protected

method visibility: OWLRDFConsumerAdapter::getOntologies() : protected

method removed: OWLRDFConsumerAdapter::translateToFacetRestrictionSet()

method removed: OWLRDFConsumerAdapter::getClassExpressionIfTranslated()

method removed: OWLRDFConsumerAdapter::translateToObjectPropertyList()

method removed: OWLRDFConsumerAdapter::translateToDataPropertyList()

method removed: OWLRDFConsumerAdapter::translateToClassExpressionSet()

method removed: OWLRDFConsumerAdapter::translateToIndividualSet()

method arguments: OWLRDFConsumerAdapter::startModel() : from String to IRI

method arguments: OWLRDFConsumerAdapter::logicalURI() : from String to IRI

method arguments: TurtleOntologyParser::parse() : added OWLOntologyLoaderConfiguration

method removed: TurtleOntologyParser::setOWLOntologyManager()

method removed: TurtleOntologyParser::getOWLOntologyManager()

class removed: TurtleOntologyParserFactory

Class refactored: from uk.ac.manchester.cs.owl.owlapi.Internals.Pointer to uk.ac.manchester.cs.owl.owlapi.MapPointer

Generic types: OWLPropertyExpression no longer generic

Generic types: OWLAxiomSearchFilter no longer generic

class refactored: AbstractInternalsImpl

class refactored: ImplUtils

class removed: OWLOntologyManagerProperties

method removed: OWLOntologyManager::getProperties()

class visibility: InitVisitorFactory : package

method arguments: EmptyInMemOWLOntologyFactory : added OWLOntologyBuilder

method arguments: ParsableOWLOntologyFactory : added OWLOntologyBuilder

method arguments: OWLOntologyFactory::loadOntology() : added OWLOntologyManager, OWLOntologyLoaderConfiguration

method deleted: OWLOntologyFactory::setOWLOntologyManager()

method deleted: OWLOntologyFactory::getOWLOntologyManager()

method arguments: OWLOntologyFactory::createOWLOntology() : added OWLOntologyManager

method arguments: OWLOntologyManager::makeLoadImportRequest() : added OWLOntologyLoaderConfiguration

method deleted: OWL2DatatypeImpl::getDatatype()

method deleted: OWL2DatatypeImpl::getOWLEntity()

generics: OWLNaryAxiom is generic

method changed: OWLOntology::containsReference() : imports flag added

method deleted: OWLDataFactory::getOWLTypedLiteral() : use getOWLLiteral()

method deleted: OWLAnnotation::isComment()

method deleted: OWLAnnotation::isLabel()

method refactored: OWLClass::getSubClassAxioms() : use method on OWLOntology

method refactored: OWLClass::getEquivalentClassesAxioms() : use method on OWLOntology

method refactored: OWLClass::getDisjointClassesAxioms() : use method on OWLOntology

method refactored: OWLClass::getDisjointUnionAxioms() : use method on OWLOntology

method changed: OWLSameIndividualAxiom::asPairwiseSameIndividualAxioms() : asPairwiseAxioms()

method changed: OWLOntology::containsReference() : imports flag added

method changed: OWLOntology::containsObjectPropertyInSignature() : imports flag added

method changed: OWLOntology::containsDataPropertyInSignature() : imports flag added

method changed: OWLOntology::containsClassInSignature() : imports flag added

method changed: OWLOntology::containsEntityInSignature() : imports flag added

method changed: OWLOntology::containsIndividualInSignature() : imports flag added

method changed: OWLOntology::containsAnnotationPropertyInSignature() : imports flag added

method changed: OWLOntology::isDeclared() : imports flag added

method changed: OWLOntology::getObjectPropertiesInSignature() : imports flag added

method changed: OWLOntology::getDataPropertiesInSignature() : imports flag added

method changed: OWLOntology::getClassesInSignature() : imports flag added

method changed: OWLOntology::getEntitiesInSignature() : imports flag added

method changed: OWLOntology::getReferencedAnonymousIndividuals() : imports flag added

method deleted: OWLOntology::getReferencedObjects() : imports flag added

method deleted: OWLOntology::getReferencedAnnotationProperties() : imports flag added

method changed: OWLOntology::getSignature() : imports flag added

method changed: OWLOntology::getIndividualsInSignature() : imports flag added

method changed: OWLOntology::getAnnotationPropertiesInSignature() : imports flag added

method changed: OWLOntology::getTBoxAxioms() : imports flag added

method changed: OWLOntology::getABoxAxioms() : imports flag added

method changed: OWLOntology::getRBoxAxioms() : imports flag added

method refactored: OWLProperty::getSubProperties() : Searcher.sub(ontology.getObjectSubPropertyAxiomsForSuperProperty(superProperty))

method refactored: OWLProperty::getSuperProperties() : Searcher.sup(ontology.getObjectSubPropertyAxiomsForSubProperty(subProperty))

method refactored: OWLClass::getSubClasses() : Searcher.sub(ontology.getSubClassAxiomsForSuperClass(superClass))

method refactored: OWLClass::getSuperClasses() : Searcher.sup(ontology.getSubClassAxiomsForSubClass(subClass))

method refactored: OWLProperty::getDisjointProperties() : Searcher.different(ontology.getDisjointObjectPropertiesAxioms(property))

method refactored: OWLProperty::getDisjointProperties() : Searcher.different(ontology.getDisjointDataPropertiesAxioms(property))

method refactored: OWLClass::getDisjointClassesAxioms() : Searcher.different(ontology.getDisjointClassesAxioms(class))

method refactored: OWLIndividual::getDifferentIndividuals() : Searcher.different(ontology.getDifferentIndividualAxioms(individual))

method refactored: OWLProperty::getEquivalentProperties() : Searcher.different(ontology.getEquivalentObjectPropertiesAxioms(property))

method refactored: OWLProperty::getEquivalentProperties() : Searcher.different(ontology.getEquivalentDataPropertiesAxioms(property))

method refactored: OWLClass::getEquivalentClassesAxioms() : Searcher.different(ontology.getEquivalentClassesAxioms(class))

method refactored: OWLIndividual::getSameIndividuals() : Searcher.different(ontology.getSameIndividualAxioms(individual))

method refactored: OWLObject::getAnnotations() : Searcher.annotations(ontology.getAnnotationAssertionAxioms(annotationSubject))

method refactored: OWLObject::getReferencingAxioms() : OWLOntology::getReferencingAxioms()

method refactored: OWLProperty::getDomains() : Searcher.domain(ontology.getObjectPropertyDomainAxioms(property))

method refactored: OWLProperty::getDomains() : Searcher.domain(ontology.getObjectPropertyRangeAxioms(property))

method refactored: OWLProperty::getRanges() : Searcher.range(ontology.getDataPropertyDomainAxioms(property))

method refactored: OWLProperty::getRanges() : Searcher.range(ontology.getDataPropertyRangeAxioms(property))

method refactored: OWLObject::getTypes() : Searcher.types(ontology.getClassAssertionAxioms(individual))

method refactored: OWLObject::getIndividuals() : Searcher.instances(ontology.getClassAssertionAxioms(class))

method deleted: OWLObject::getOWLEntity()

method refactored: OWLIndividual::getObjectPropertyValues() : Searcher.values(ontology.getObjectPropertyAssertionAxioms(individual), property)

method refactored: OWLIndividual::getNegativeObjectPropertyValues() : Searcher.negValues(ontology.getNegativeObjectPropertyAssertionAxioms(individual), property)

method refactored: OWLIndividual::getDataPropertyValues() : Searcher.values(ontology.getDataPropertyAssertionAxioms(individual), property)

method refactored: OWLIndividual::getNegativeDataPropertyValues() : Searcher.negValues(ontology.getNegativeDataPropertyAssertionAxioms(individual), property)

method refactored: OWLIndividual::hasObjectPropertyValues() : Searcher.values(ontology.getObjectPropertyAssertionAxioms(individual), property).isEmpty()

method refactored: OWLIndividual::hasNegativeObjectPropertyValues() : Searcher.negValues(ontology.getNegativeObjectPropertyAssertionAxioms(individual), property).isEmpty()

method refactored: OWLIndividual::hasDataPropertyValues() : Searcher.values(ontology.getDataPropertyAssertionAxioms(individual), property).isEmpty()

method refactored: OWLIndividual::hasNegativeDataPropertyValues() : Searcher.negValues(ontology.getNegativeDataPropertyAssertionAxioms(individual), property).isEmpty()

method refactored: OWLProperty::isTransitive() : Searcher.isTransitive()

method refactored: OWLProperty::isSymmetric() : Searcher.isSymmetric()

method refactored: OWLProperty::isReflexive() : Searcher.isReflexive()

method refactored: OWLProperty::isIrreflexive() : Searcher.isIrreflexive()

method refactored: OWLProperty::isAsymmetric() : Searcher.isAsymmetric()

method refactored: OWLProperty::isInverseFunctional() : Searcher.isInverseFunctional()

method refactored: OWLProperty::isFunctional() : Searcher.isFunctional()

method refactored: OWLProperty::getInverses() : Searcher.inverses(ontology.getInverseObjectPropertyAxioms(property))

method refactored: OWLClass::isDefined() : Searcher.isDefined()

method refactored: OWLObject::getAnnotationAssertionAxioms() : OWLOntology::getAnnotationAssertionAxioms()

method deleted: OWLOntologyManager::setSilentMissingImportsHandling() : the setting is in OWLOntologyLoaderConfiguration

method deleted: OWLOntologyManager::isSilentMissingImportsHandling() : the setting is in OWLOntologyLoaderConfiguration

method deleted: OWLOntologyManager::getEntities() : use getSignature()

method changed: OWLOntology::getAxioms() : imports flag added

method changed: OWLOntology::getAxiomsCount() : imports flag added

method changed: OWLOntology::containsAxiomIgnoreAnnotations() : use containsAxiom() with imports flag and Search flag

method changed: OWLOntology::getAxiomIgnoreAnnotations() : use getAxiom() with imports flag and Search flag

method deleted: OWLSubClassOfAxiom::contains()

method deleted: OWLSubClassOfAxiom::getClassExpressionsMinus()

method deleted: OWLSubClassOfAxiom::getClassExpressions()

method deleted: OWLOntologyManager::createOntology(IRI, IRI) : pass an OWLOntologyID

Package change: from uk.ac.manchester.cs.owlapi.dlsyntax.parser to org.semanticweb.owlapi.dlsyntax.parser

new class: DLSyntaxOWLParser : public parser for use in actual parsing

class visibility: JavaCharStream : package

class visibility: ParseException : package

class visibility: DLSyntaxParserTokenManager : package

class visibility: DLSyntaxParser : package

class visibility: DLSyntaxParserConstants : package

class visibility: Token : package

class visibility: Token : TokenMgrError

Package change: from uk.ac.manchester.cs.owlapi.dlsyntax.DLSyntaxHTMLOntologyFormat to org.semanticweb.owlapi.formats.DLSyntaxHTMLOntologyFormat

Package change: from uk.ac.manchester.cs.owlapi.dlsyntax.DLSyntaxOntologyFormat to org.semanticweb.owlapi.formats.DLSyntaxOntologyFormat

Package change: from uk.ac.manchester.cs.owlapi.dlsyntax to org.semanticweb.owlapi.dlsyntax.renderer

method arguments: DLSyntaxHTMLOntologyStorer::storeOntology() : dropped manager

Enum change: ModuleType.BOT_OF_TOP removed: use STAR

Enum change: ModuleType.TOP_OF_BOT removed: use STAR