Ober Lab Software Wiki - orenlivne/ober GitHub Wiki

This is the main page of the Wiki describing Oren Livne's work at the Ober Lab. The software tools can be freely downloaded and used. For further assistance, please contact the Lab via the information provided on our website, http://ober.bsd.uchicago.edu/people.php .

Topics

• Setup - tool installation and environment setup
• PRIMAL - Pedigree-based phasing and imputation algorithm and parallel pipelines
• annotate - a web-based service for annotating a list of variants using the Hutterites database (free tool; the data is internal to the Ober Lab, but you can port it to your own annotation database).
• File Locations - data file paths and URLs relevant only to Ober Lab members