Harvester data dependencies - ohsu-comp-bio/g2p-aggregator GitHub Wiki
You can setup the harvester data dependencies by running make
in the /harvester directory.
As a convienience, the data dependencies can be downloaded from https://s3-us-west-2.amazonaws.com/g2p-aggregator/data-dependencies.zip
unzip -vl data-dependencies.zip
Archive: data-dependencies.zip
Length Method Size Ratio Date Time CRC-32 Name
-------- ------ ------- ----- ---- ---- ------ ----
579484 Defl:N 46027 92% 05-31-17 11:36 9d42b6e4 cgi_biomarkers_per_variant.tsv
199221341 Defl:N 40232812 80% 05-15-17 15:13 9a1ac0ed cosmic_lookup_table.tsv
54345 Defl:N 8139 85% 05-31-17 11:33 a6e380ff oncokb_all_actionable_variants_20170531.tsv
43 Stored 43 0% 05-31-17 11:33 11ee262e oncokb_all_actionable_variants.tsv
-------- ------- --- -------
199855213 40287021 80% 4 files
the resulting directory structure should be:
-rw-r--r-- 1 walsbr OHSUM01\Domain Users 579484 May 31 11:36 cgi_biomarkers_per_variant.tsv
-rw-r--r-- 1 walsbr OHSUM01\Domain Users 199221341 May 15 15:13 cosmic_lookup_table.tsv
lrwxr-xr-x 1 walsbr OHSUM01\Domain Users 43 May 31 11:33 oncokb_all_actionable_variants.tsv -> oncokb_all_actionable_variants_20170531.tsv
-rw-r--r-- 1 walsbr OHSUM01\Domain Users 54345 May 31 11:33 oncokb_all_actionable_variants_20170531.tsv