Somatic Mutation Phenotypes

Example: python generate_plink_inputs.py --arachne arachne.compbio.ohsu.edu --graph cedar --gene BRCA1 --project TCGA-BRCA > TCGA-BRCA_BRCA1_phenotype.tsv

Somatic Methylation Phenotypes

TBD

Somatic CNA Phenotypes

TBD