161214 STAR... - npslindstrom/DE-analysis GitHub Wiki

Still working with STAR. The script I pasted in the last post did not work since I used the wrong genome annotation files. I am currently trying a new script with the correct files that correspond to the reference genome I used. Linnea succeeded with creating the genome index files so we tried to use those but it seems like you need to have the entire directory and not just the alignment files for doing the alignment step.

Tomorrow there is the poster presentation seminar. Hopefully the genome indexing works until then.