Weekly Benchmarks - npredey/GeneticAncestryTool GitHub Wiki

FOCUS:

Nick: Wrapper/integration

Kavina: EIGENSTRAT/plotting, final application note rough draft and final paper

Andrea: Parsing out 'bad' data

Week	Nick	Kavina	Andrea
February 27	Presentation-Implementation Plan	Presentation-Introduction	Presentation-Intro/Weekly Benchmarks
March 6	SPRING BREAK	SPRING BREAK	SPRING BREAK
March 13	test files (merge .bed,.bim,.baf file)	figure out how to use EIGENSTRAT(input/output)	figure out how to create parser for bad data (input/output)
March 20 (22nd repo check)	set up wrapper structure	continue work on EIGENSTRAT (command line)	begin writing parser (Python)
March 27 (29th 5min presentation)	begin integration	finish up EIGENSTRAT	finish up parser
April 3 (5th repo check)	integrate EIGENSTRAT and parser	start paper; test EIGENSTRAT*having trouble with eigenstrat so going to use R to plot instead(maybe)	test parser
April 10 (10th rough draft due;12th 5min presentation)	test wrapper	work on application note	test wrapper
April 17 (19th repo check)	finishing touches on wrapper	finish/final edits on application note	finish/final edits on application note