Home - npredey/GeneticAncestryTool GitHub Wiki

Welcome to the Genetic Ancestry Tool wiki!


GOAL: Build a wrapper that automates the merging of any set of genotype files with HapMap genotypes, performs PCA, and plots the results

Input: PLINK .bed/.bim/.fam files from 1000 Genomes Project and cohort of interest

Output: genotype principal components, plots, “bad” examples and how to fix them

Software Tools: PLINK EIGENSTRAT Python