Screencast Tutorials - nolanlab/spade GitHub Wiki

These screencasts are outdated -- they are from an older version of the SPADE GUI. However, until we make new ones, they may be helpful. Screencasts 5-7 are still pretty accurate. Thanks for bearing with us.

Part 1: Installing R and Cytoscape prerequisites

Part 2: Installing the SPADE package for R

Part 3: Installing the SPADE Cytoscape plugin

Part 4: Starting a new analysis in Cytoscape

Part 5: Analyzing SPADE output with Cytoscape

Part 6: Modifying tree layout and batch producing PDFs

Part 7: Adjusting node size and exporting single PDFs