exercises - nibb-gitc/gitc2018july-rnaseq GitHub Wiki

練習問題

• ex8 -- NGS基礎復習問題集
• ex3 -- data import and visualization
• ex4 -- MA plot
• ex2 -- Transcript-based RNA-seq pipeline (mapping and counting)
• ex1 -- Genome-based RNA-seq pipeline (mapping and counting)
• ex5 -- edgeR (classic)
• ex12 -- [advanced] edgeR (linear model)
• ex6 -- clustering and PCA
• ex9 -- [advanced] Trinityによる de novo assembly
• ex10 -- Gene set analysis
• ex11 -- ErmineJ tutorial

実戦演習

• case1 -- transcript-based RNA-seq (Trinity/eXpress/edgeR workflow)
• case2 -- genome-based RNA-seq analysis (HISAT2/StringTie/edgeR workflow)