Build the singularity container.

singularity build xcpEngine.sif docker://pennbbl/xcpengine:latest

Put your files in a specific folder

.
├── AnatCohortsub20.csv
├── fc-36p_scrub.dsn
├── FuncCohortsub20.csv
└── xcpenginescript1.sh

make a script to make it easier to run

singularity run -B /misc/tezca/egarza/Practica xcpEngine.sif -d xcpenginerun/fc-36p_scrub.dsn -c xcpenginerun/FuncCohortsub20.csv -o xcpengineout -t 1 -r .

Run in Don Clusterio

fsl_sub -N sub20xcp xcpenginerun/xcpenginescript1.sh