wsl2_nightly_test - morphorm22/engine GitHub Wiki

Building Plato Nightly Test Suite! Cleaning build directory! Cloning into 'spack'... Updating files: 78% (9004/11480) Updating files: 79% (9070/11480) Updating files: 80% (9184/11480) Updating files: 81% (9299/11480) Updating files: 82% (9414/11480) Updating files: 83% (9529/11480) Updating files: 84% (9644/11480) Updating files: 85% (9758/11480) Updating files: 86% (9873/11480) Updating files: 87% (9988/11480) Updating files: 88% (10103/11480) Updating files: 89% (10218/11480) Updating files: 90% (10332/11480) Updating files: 91% (10447/11480) Updating files: 92% (10562/11480) Updating files: 93% (10677/11480) Updating files: 94% (10792/11480) Updating files: 95% (10906/11480) Updating files: 96% (11021/11480) Updating files: 97% (11136/11480) Updating files: 98% (11251/11480) Updating files: 99% (11366/11480) Updating files: 100% (11480/11480) Updating files: 100% (11480/11480), done. Cloning into 'engine'... Cloning into 'analyze'... Cloning into 'morphormtests'... Updating files: 90% (743/817) Updating files: 91% (744/817) Updating files: 92% (752/817) Updating files: 93% (760/817) Updating files: 94% (768/817) Updating files: 95% (777/817) Updating files: 96% (785/817) Updating files: 97% (793/817) Updating files: 98% (801/817) Updating files: 99% (809/817) Updating files: 100% (817/817) Updating files: 100% (817/817), done. Cloning into 'moris'... ==> Created environment in /home/hansen/Codes/Morphorm ==> You can activate this environment with: ==> spack env activate /home/hansen/Codes/Morphorm ==> Added repo with namespace 'plato'. ~/Codes/Morphorm/nightly/engine.wiki ~/Codes/Morphorm Already on 'master' Your branch is up to date with 'origin/master'. From github.com:morphorm22/engine.wiki

  • branch master -> FETCH_HEAD bbbe60c..a7876bf master -> origin/master Updating bbbe60c..a7876bf Fast-forward Details/CUDAEngine_tests.md | 268 +++---- Details/CUDAMorphorm_tests.md | 1298 ++++++++++++++++---------------- Details/MFEngine_tests.md | 250 +++--- Details/MFMorphorm_tests.md | 986 ++++++++++++------------ Details/nightly_test.md | 1669 +++++++++++++++++++++-------------------- builddate.md | 2 +- 6 files changed, 2247 insertions(+), 2226 deletions(-) error: branch 'working' not found. Switched to a new branch 'working' /Codes/Morphorm ==> Adding morphormtests@main ^lapack ^platoanalyze@developamgxcuda+enginemesh+esp+geometry+mpmd+python+tacho+tpetra ^platoengine@develop+analyze_tests+esp+expy+geometry+ipopt+platoproxy+platostatics+prune+stk+unit_testingxtk to environment /home/hansen/Codes/Morphorm ==> Concretized morphormtests@main ^[virtuals=lapack] lapack ^platoanalyze@developamgxcuda+enginemesh+esp+geometry+mpmd+python+tacho+tpetra ^platoengine@develop+analyze_tests+esp+expy+geometry+ipopt+platoproxy+platostatics+prune+stk+unit_testing~xtk

==> Installing gcc-runtime-11.4.0-vfbxhvvvqok2icbiykzq3fupmz4oizzz [1/87] ==> No binary for gcc-runtime-11.4.0-vfbxhvvvqok2icbiykzq3fupmz4oizzz found: installing from source ==> No patches needed for gcc-runtime ==> gcc-runtime: Executing phase: 'install' ==> gcc-runtime: Successfully installed gcc-runtime-11.4.0-vfbxhvvvqok2icbiykzq3fupmz4oizzz Stage: 0.00s. Install: 0.13s. Post-install: 0.07s. Total: 0.22s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/gcc-runtime-11.4.0-vfbxhvvvqok2icbiykzq3fupmz4oizzz ==> Installing re2c-2.2-hq3ydqr7ftb35krk2cat4a4tbver6etr [2/87] ==> No binary for re2c-2.2-hq3ydqr7ftb35krk2cat4a4tbver6etr found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/0f/0fc45e4130a8a555d68e230d1795de0216dfe99096b61b28e67c86dfd7d86bda.tar.xz ==> No patches needed for re2c ==> re2c: Executing phase: 'configure' ==> re2c: Executing phase: 'build' ==> re2c: Executing phase: 'install' ==> re2c: Successfully installed re2c-2.2-hq3ydqr7ftb35krk2cat4a4tbver6etr Stage: 0.96s. Configure: 3.64s. Build: 13.51s. Install: 0.08s. Post-install: 0.08s. Total: 18.29s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/re2c-2.2-hq3ydqr7ftb35krk2cat4a4tbver6etr ==> Installing boost-1.84.0-lymjtubwo3fg5pfzcm7vocii7hazme5s [3/87] ==> No binary for boost-1.84.0-lymjtubwo3fg5pfzcm7vocii7hazme5s found: installing from source ==> Fetching https://boostorg.jfrog.io/artifactory/main/release/1.84.0/source/boost_1_84_0.tar.bz2 ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/boost/bootstrap-compiler.patch ==> Ran patch() for boost ==> boost: Executing phase: 'install' ==> boost: Successfully installed boost-1.84.0-lymjtubwo3fg5pfzcm7vocii7hazme5s Stage: 47.64s. Install: 1m 17.36s. Post-install: 3.36s. Total: 2m 8.40s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/boost-1.84.0-lymjtubwo3fg5pfzcm7vocii7hazme5s ==> Installing gmake-4.4.1-echlqtvk7cd6yqexjoly3zqwtpogvsqo [4/87] ==> No binary for gmake-4.4.1-echlqtvk7cd6yqexjoly3zqwtpogvsqo found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/dd/dd16fb1d67bfab79a72f5e8390735c49e3e8e70b4945a15ab1f81ddb78658fb3.tar.gz ==> No patches needed for gmake ==> gmake: Executing phase: 'install' ==> gmake: Successfully installed gmake-4.4.1-echlqtvk7cd6yqexjoly3zqwtpogvsqo Stage: 0.55s. Install: 10.08s. Post-install: 0.05s. Total: 10.70s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/gmake-4.4.1-echlqtvk7cd6yqexjoly3zqwtpogvsqo ==> Installing ca-certificates-mozilla-2023-05-30-763uln2mtitcw6na72x7df2375r7xmmt [5/87] ==> No binary for ca-certificates-mozilla-2023-05-30-763uln2mtitcw6na72x7df2375r7xmmt found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/5f/5fadcae90aa4ae041150f8e2d26c37d980522cdb49f923fc1e1b5eb8d74e71ad ==> No patches needed for ca-certificates-mozilla ==> ca-certificates-mozilla: Executing phase: 'install' ==> ca-certificates-mozilla: Successfully installed ca-certificates-mozilla-2023-05-30-763uln2mtitcw6na72x7df2375r7xmmt Stage: 0.43s. Install: 0.00s. Post-install: 0.04s. Total: 0.49s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/ca-certificates-mozilla-2023-05-30-763uln2mtitcw6na72x7df2375r7xmmt ==> Installing zlib-1.3-5scpb5gvxq7yh5hugfbkfdevsukh7ooe [6/87] ==> No binary for zlib-1.3-5scpb5gvxq7yh5hugfbkfdevsukh7ooe found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/ff/ff0ba4c292013dbc27530b3a81e1f9a813cd39de01ca5e0f8bf355702efa593e.tar.gz ==> No patches needed for zlib ==> zlib: Executing phase: 'edit' ==> zlib: Executing phase: 'build' ==> zlib: Executing phase: 'install' ==> zlib: Successfully installed zlib-1.3-5scpb5gvxq7yh5hugfbkfdevsukh7ooe Stage: 0.56s. Edit: 0.29s. Build: 0.73s. Install: 0.37s. Post-install: 0.05s. Total: 2.03s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/zlib-1.3-5scpb5gvxq7yh5hugfbkfdevsukh7ooe ==> Installing berkeley-db-18.1.40-adse6jtz2xcv4ce6ti6kekvylheabvg5 [7/87] ==> No binary for berkeley-db-18.1.40-adse6jtz2xcv4ce6ti6kekvylheabvg5 found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/0c/0cecb2ef0c67b166de93732769abdeba0555086d51de1090df325e18ee8da9c8.tar.gz ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/berkeley-db/drop-docs.patch ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/berkeley-db/tls.patch ==> Ran patch() for berkeley-db ==> berkeley-db: Executing phase: 'autoreconf' ==> berkeley-db: Executing phase: 'configure' ==> berkeley-db: Executing phase: 'build' ==> berkeley-db: Executing phase: 'install' ==> berkeley-db: Successfully installed berkeley-db-18.1.40-adse6jtz2xcv4ce6ti6kekvylheabvg5 Stage: 2.12s. Autoreconf: 0.00s. Configure: 9.64s. Build: 11.26s. Install: 0.34s. Post-install: 0.06s. Total: 23.46s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/berkeley-db-18.1.40-adse6jtz2xcv4ce6ti6kekvylheabvg5 ==> Installing pkgconf-1.9.5-5hn7d25trya2akggievqvypmeg4tfc5s [8/87] ==> No binary for pkgconf-1.9.5-5hn7d25trya2akggievqvypmeg4tfc5s found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/1a/1ac1656debb27497563036f7bffc281490f83f9b8457c0d60bcfb638fb6b6171.tar.xz ==> No patches needed for pkgconf ==> pkgconf: Executing phase: 'autoreconf' ==> pkgconf: Executing phase: 'configure' ==> pkgconf: Executing phase: 'build' ==> pkgconf: Executing phase: 'install' ==> pkgconf: Successfully installed pkgconf-1.9.5-5hn7d25trya2akggievqvypmeg4tfc5s Stage: 0.55s. Autoreconf: 0.00s. Configure: 2.47s. Build: 1.05s. Install: 0.16s. Post-install: 0.05s. Total: 4.32s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pkgconf-1.9.5-5hn7d25trya2akggievqvypmeg4tfc5s ==> Installing pcre2-10.42-35ivl2off2hjoluoalox45ltnrga7ocb [9/87] ==> No binary for pcre2-10.42-35ivl2off2hjoluoalox45ltnrga7ocb found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/8d/8d36cd8cb6ea2a4c2bb358ff6411b0c788633a2a45dabbf1aeb4b701d1b5e840.tar.bz2 ==> No patches needed for pcre2 ==> pcre2: Executing phase: 'autoreconf' ==> pcre2: Executing phase: 'configure' ==> pcre2: Executing phase: 'build' ==> pcre2: Executing phase: 'install' ==> pcre2: Successfully installed pcre2-10.42-35ivl2off2hjoluoalox45ltnrga7ocb Stage: 0.83s. Autoreconf: 0.00s. Configure: 2.95s. Build: 17.50s. Install: 0.37s. Post-install: 0.10s. Total: 21.77s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pcre2-10.42-35ivl2off2hjoluoalox45ltnrga7ocb ==> Installing libmd-1.0.4-rkykfcgworcwi2s3hlmlicf3elbsz5ib [10/87] ==> No binary for libmd-1.0.4-rkykfcgworcwi2s3hlmlicf3elbsz5ib found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/f5/f51c921042e34beddeded4b75557656559cf5b1f2448033b4c1eec11c07e530f.tar.xz ==> No patches needed for libmd ==> libmd: Executing phase: 'autoreconf' ==> libmd: Executing phase: 'configure' ==> libmd: Executing phase: 'build' ==> libmd: Executing phase: 'install' ==> libmd: Successfully installed libmd-1.0.4-rkykfcgworcwi2s3hlmlicf3elbsz5ib Stage: 0.53s. Autoreconf: 0.00s. Configure: 2.77s. Build: 0.67s. Install: 0.14s. Post-install: 0.05s. Total: 4.19s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libmd-1.0.4-rkykfcgworcwi2s3hlmlicf3elbsz5ib ==> Installing lz4-1.9.4-k67nvhe2hsanynndpxo3drq7gs3eiwtj [11/87] ==> No binary for lz4-1.9.4-k67nvhe2hsanynndpxo3drq7gs3eiwtj found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/0b/0b0e3aa07c8c063ddf40b082bdf7e37a1562bda40a0ff5272957f3e987e0e54b.tar.gz ==> Ran patch() for lz4 ==> lz4: Executing phase: 'edit' ==> lz4: Executing phase: 'build' ==> lz4: Executing phase: 'install' ==> lz4: Successfully installed lz4-1.9.4-k67nvhe2hsanynndpxo3drq7gs3eiwtj Stage: 0.51s. Edit: 0.00s. Build: 1.29s. Install: 0.06s. Post-install: 0.05s. Total: 1.94s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/lz4-1.9.4-k67nvhe2hsanynndpxo3drq7gs3eiwtj ==> Installing util-macros-1.19.3-nuamkzlrjfhlxafks7p5zab7utxbyh3v [12/87] ==> No binary for util-macros-1.19.3-nuamkzlrjfhlxafks7p5zab7utxbyh3v found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/0f/0f812e6e9d2786ba8f54b960ee563c0663ddbe2434bf24ff193f5feab1f31971.tar.bz2 ==> No patches needed for util-macros ==> util-macros: Executing phase: 'autoreconf' ==> util-macros: Executing phase: 'configure' ==> util-macros: Executing phase: 'build' ==> util-macros: Executing phase: 'install' ==> util-macros: Successfully installed util-macros-1.19.3-nuamkzlrjfhlxafks7p5zab7utxbyh3v Stage: 0.46s. Autoreconf: 0.00s. Configure: 1.22s. Build: 0.00s. Install: 0.02s. Post-install: 0.05s. Total: 1.78s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/util-macros-1.19.3-nuamkzlrjfhlxafks7p5zab7utxbyh3v ==> Installing libffi-3.4.4-jdwuxp47pq4xx7tyf7kad2fpquiuvjfz [13/87] ==> No binary for libffi-3.4.4-jdwuxp47pq4xx7tyf7kad2fpquiuvjfz found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/d6/d66c56ad259a82cf2a9dfc408b32bf5da52371500b84745f7fb8b645712df676.tar.gz ==> Fetching https://github.com/libffi/libffi/commit/ce077e5565366171aa1b4438749b0922fce887a4.patch?full_index=1 ==> Applied patch https://github.com/libffi/libffi/commit/ce077e5565366171aa1b4438749b0922fce887a4.patch?full_index=1 ==> libffi: Executing phase: 'autoreconf' ==> libffi: Executing phase: 'configure' ==> libffi: Executing phase: 'build' ==> libffi: Executing phase: 'install' ==> libffi: Successfully installed libffi-3.4.4-jdwuxp47pq4xx7tyf7kad2fpquiuvjfz Stage: 1.24s. Autoreconf: 0.00s. Configure: 3.79s. Build: 1.02s. Install: 0.19s. Post-install: 0.05s. Total: 6.33s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libffi-3.4.4-jdwuxp47pq4xx7tyf7kad2fpquiuvjfz ==> Installing zlib-ng-2.1.5-xa7ucpzwvnunrt6naeitvgc67m2vhlue [14/87] ==> No binary for zlib-ng-2.1.5-xa7ucpzwvnunrt6naeitvgc67m2vhlue found: installing from source ==> Fetching https://github.com/zlib-ng/zlib-ng/archive/2.1.5.tar.gz ==> No patches needed for zlib-ng ==> zlib-ng: Executing phase: 'autoreconf' ==> zlib-ng: Executing phase: 'configure' ==> zlib-ng: Executing phase: 'build' ==> zlib-ng: Executing phase: 'install' ==> zlib-ng: Successfully installed zlib-ng-2.1.5-xa7ucpzwvnunrt6naeitvgc67m2vhlue Stage: 2.04s. Autoreconf: 0.00s. Configure: 2.82s. Build: 2.00s. Install: 0.06s. Post-install: 0.05s. Total: 7.01s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/zlib-ng-2.1.5-xa7ucpzwvnunrt6naeitvgc67m2vhlue ==> Installing libiconv-1.17-xvvr34ffol76epxa5arrgy3uchubanwa [15/87] ==> No binary for libiconv-1.17-xvvr34ffol76epxa5arrgy3uchubanwa found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/8f/8f74213b56238c85a50a5329f77e06198771e70dd9a739779f4c02f65d971313.tar.gz ==> No patches needed for libiconv ==> libiconv: Executing phase: 'autoreconf' ==> libiconv: Executing phase: 'configure' ==> libiconv: Executing phase: 'build' ==> libiconv: Executing phase: 'install' ==> libiconv: Successfully installed libiconv-1.17-xvvr34ffol76epxa5arrgy3uchubanwa Stage: 0.59s. Autoreconf: 0.00s. Configure: 9.93s. Build: 7.47s. Install: 0.50s. Post-install: 0.08s. Total: 18.60s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libiconv-1.17-xvvr34ffol76epxa5arrgy3uchubanwa ==> Installing libsigsegv-2.14-lllyktv5wpj2d2m23krpevx7bxoml6op [16/87] ==> No binary for libsigsegv-2.14-lllyktv5wpj2d2m23krpevx7bxoml6op found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/cd/cdac3941803364cf81a908499beb79c200ead60b6b5b40cad124fd1e06caa295.tar.gz ==> No patches needed for libsigsegv ==> libsigsegv: Executing phase: 'autoreconf' ==> libsigsegv: Executing phase: 'configure' ==> libsigsegv: Executing phase: 'build' ==> libsigsegv: Executing phase: 'install' ==> libsigsegv: Successfully installed libsigsegv-2.14-lllyktv5wpj2d2m23krpevx7bxoml6op Stage: 0.54s. Autoreconf: 0.00s. Configure: 3.24s. Build: 0.49s. Install: 0.08s. Post-install: 0.05s. Total: 4.44s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libsigsegv-2.14-lllyktv5wpj2d2m23krpevx7bxoml6op ==> Installing zstd-1.5.5-fkspl7nljnx73w4mocpgfvkkot73lghq [17/87] ==> No binary for zstd-1.5.5-fkspl7nljnx73w4mocpgfvkkot73lghq found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/98/98e9c3d949d1b924e28e01eccb7deed865eefebf25c2f21c702e5cd5b63b85e1.tar.gz ==> No patches needed for zstd ==> zstd: Executing phase: 'edit' ==> zstd: Executing phase: 'build' ==> zstd: Executing phase: 'install' ==> zstd: Successfully installed zstd-1.5.5-fkspl7nljnx73w4mocpgfvkkot73lghq Stage: 0.42s. Edit: 0.00s. Build: 0.00s. Install: 19.35s. Post-install: 0.05s. Total: 19.85s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/zstd-1.5.5-fkspl7nljnx73w4mocpgfvkkot73lghq ==> Installing xz-5.4.6-e6rkvbgwyeo77qicmu4ddwwwvw3x5lfb [18/87] ==> No binary for xz-5.4.6-e6rkvbgwyeo77qicmu4ddwwwvw3x5lfb found: installing from source ==> Fetching https://prdownloads.sourceforge.net/lzmautils/files/xz-5.4.6.tar.bz2 ==> No patches needed for xz ==> xz: Executing phase: 'autoreconf' ==> xz: Executing phase: 'configure' ==> xz: Executing phase: 'build' ==> xz: Executing phase: 'install' ==> xz: Successfully installed xz-5.4.6-e6rkvbgwyeo77qicmu4ddwwwvw3x5lfb Stage: 7.76s. Autoreconf: 0.00s. Configure: 6.03s. Build: 4.42s. Install: 1.08s. Post-install: 0.11s. Total: 19.44s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/xz-5.4.6-e6rkvbgwyeo77qicmu4ddwwwvw3x5lfb ==> Installing findutils-4.9.0-wen3lwdyqtnn2f6a5y6t4xtw6nf4r2yw [19/87] ==> No binary for findutils-4.9.0-wen3lwdyqtnn2f6a5y6t4xtw6nf4r2yw found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/a2/a2bfb8c09d436770edc59f50fa483e785b161a3b7b9d547573cb08065fd462fe.tar.xz ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/findutils/nonnull.patch ==> findutils: Executing phase: 'autoreconf' ==> findutils: Executing phase: 'configure' ==> findutils: Executing phase: 'build' ==> findutils: Executing phase: 'install' ==> findutils: Successfully installed findutils-4.9.0-wen3lwdyqtnn2f6a5y6t4xtw6nf4r2yw Stage: 0.54s. Autoreconf: 0.00s. Configure: 29.07s. Build: 3.16s. Install: 0.93s. Post-install: 0.08s. Total: 33.80s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/findutils-4.9.0-wen3lwdyqtnn2f6a5y6t4xtw6nf4r2yw ==> Installing nghttp2-1.57.0-25g474kpy6wfl4hayd4q7quoagxgzm2m [20/87] ==> No binary for nghttp2-1.57.0-25g474kpy6wfl4hayd4q7quoagxgzm2m found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/1e/1e3258453784d3b7e6cc48d0be087b168f8360b5d588c66bfeda05d07ad39ffd.tar.gz ==> No patches needed for nghttp2 ==> nghttp2: Executing phase: 'autoreconf' ==> nghttp2: Executing phase: 'configure' ==> nghttp2: Executing phase: 'build' ==> nghttp2: Executing phase: 'install' ==> nghttp2: Successfully installed nghttp2-1.57.0-25g474kpy6wfl4hayd4q7quoagxgzm2m Stage: 0.73s. Autoreconf: 0.00s. Configure: 7.02s. Build: 2.94s. Install: 0.22s. Post-install: 0.06s. Total: 11.00s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/nghttp2-1.57.0-25g474kpy6wfl4hayd4q7quoagxgzm2m ==> Installing util-linux-uuid-2.38.1-iopd3wuloimklziogwqz762ldithtkmw [21/87] ==> No binary for util-linux-uuid-2.38.1-iopd3wuloimklziogwqz762ldithtkmw found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/08/0820eb8eea90408047e3715424bc6be771417047f683950fecb4bdd2e2cbbc6e.tar.gz ==> No patches needed for util-linux-uuid ==> util-linux-uuid: Executing phase: 'autoreconf' ==> util-linux-uuid: Executing phase: 'configure' ==> util-linux-uuid: Executing phase: 'build' ==> util-linux-uuid: Executing phase: 'install' ==> util-linux-uuid: Successfully installed util-linux-uuid-2.38.1-iopd3wuloimklziogwqz762ldithtkmw Stage: 1.56s. Autoreconf: 0.00s. Configure: 11.48s. Build: 0.72s. Install: 0.31s. Post-install: 0.08s. Total: 14.19s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/util-linux-uuid-2.38.1-iopd3wuloimklziogwqz762ldithtkmw ==> Installing ncurses-6.4-cmrehw7viwlh36wnu6rkvtiljbti5ems [22/87] ==> No binary for ncurses-6.4-cmrehw7viwlh36wnu6rkvtiljbti5ems found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/69/6931283d9ac87c5073f30b6290c4c75f21632bb4fc3603ac8100812bed248159.tar.gz ==> No patches needed for ncurses ==> ncurses: Executing phase: 'autoreconf' ==> ncurses: Executing phase: 'configure' ==> ncurses: Executing phase: 'build' ==> ncurses: Executing phase: 'install' ==> ncurses: Successfully installed ncurses-6.4-cmrehw7viwlh36wnu6rkvtiljbti5ems Stage: 0.79s. Autoreconf: 0.00s. Configure: 21.30s. Build: 24.96s. Install: 3.56s. Post-install: 0.59s. Total: 51.25s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/ncurses-6.4-cmrehw7viwlh36wnu6rkvtiljbti5ems ==> Installing libbsd-0.11.7-kd5ysuvivbdwnoqvw7jzap7ehiyrlyru [23/87] ==> No binary for libbsd-0.11.7-kd5ysuvivbdwnoqvw7jzap7ehiyrlyru found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/9b/9baa186059ebbf25c06308e9f991fda31f7183c0f24931826d83aa6abd8a0261.tar.xz ==> No patches needed for libbsd ==> libbsd: Executing phase: 'autoreconf' ==> libbsd: Executing phase: 'configure' ==> libbsd: Executing phase: 'build' ==> libbsd: Executing phase: 'install' ==> libbsd: Successfully installed libbsd-0.11.7-kd5ysuvivbdwnoqvw7jzap7ehiyrlyru Stage: 0.56s. Autoreconf: 0.00s. Configure: 4.18s. Build: 1.55s. Install: 0.23s. Post-install: 0.10s. Total: 6.65s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libbsd-0.11.7-kd5ysuvivbdwnoqvw7jzap7ehiyrlyru ==> Installing swig-4.1.1-hrc5tjgudlubrmcj2iroq3lwzh34yw7c [24/87] ==> No binary for swig-4.1.1-hrc5tjgudlubrmcj2iroq3lwzh34yw7c found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/2a/2af08aced8fcd65cdb5cc62426768914bedc735b1c250325203716f78e39ac9b.tar.gz ==> No patches needed for swig ==> swig: Executing phase: 'autoreconf' ==> swig: Executing phase: 'configure' ==> swig: Executing phase: 'build' ==> swig: Executing phase: 'install' ==> swig: Successfully installed swig-4.1.1-hrc5tjgudlubrmcj2iroq3lwzh34yw7c Stage: 1.21s. Autoreconf: 0.00s. Configure: 5.41s. Build: 6.94s. Install: 3.06s. Post-install: 0.21s. Total: 16.87s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/swig-4.1.1-hrc5tjgudlubrmcj2iroq3lwzh34yw7c ==> Installing pigz-2.8-eyh64b6nj5hyynkmlmrn3yk2kscbsuu3 [25/87] ==> No binary for pigz-2.8-eyh64b6nj5hyynkmlmrn3yk2kscbsuu3 found: installing from source ==> Fetching https://github.com/madler/pigz/archive/v2.8.tar.gz ==> No patches needed for pigz ==> pigz: Executing phase: 'edit' ==> pigz: Executing phase: 'build' ==> pigz: Executing phase: 'install' ==> pigz: Successfully installed pigz-2.8-eyh64b6nj5hyynkmlmrn3yk2kscbsuu3 Stage: 1.82s. Edit: 0.00s. Build: 1.27s. Install: 0.00s. Post-install: 0.05s. Total: 3.17s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pigz-2.8-eyh64b6nj5hyynkmlmrn3yk2kscbsuu3 ==> Installing diffutils-3.9-vivs6dto4hd2lx4jb4t6fldqwl5nogc7 [26/87] ==> No binary for diffutils-3.9-vivs6dto4hd2lx4jb4t6fldqwl5nogc7 found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/d8/d80d3be90a201868de83d78dad3413ad88160cc53bcc36eb9eaf7c20dbf023f1.tar.xz ==> No patches needed for diffutils ==> diffutils: Executing phase: 'autoreconf' ==> diffutils: Executing phase: 'configure' ==> diffutils: Executing phase: 'build' ==> diffutils: Executing phase: 'install' ==> diffutils: Successfully installed diffutils-3.9-vivs6dto4hd2lx4jb4t6fldqwl5nogc7 Stage: 0.48s. Autoreconf: 0.00s. Configure: 20.21s. Build: 1.81s. Install: 0.46s. Post-install: 0.08s. Total: 23.07s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/diffutils-3.9-vivs6dto4hd2lx4jb4t6fldqwl5nogc7 ==> Installing libxml2-2.10.3-ycmdvngs7u5vxqvuaowapskassdbyyoy [27/87] ==> No binary for libxml2-2.10.3-ycmdvngs7u5vxqvuaowapskassdbyyoy found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/5d/5d2cc3d78bec3dbe212a9d7fa629ada25a7da928af432c93060ff5c17ee28a9c.tar.xz ==> Fetching https://mirror.spack.io/_source-cache/archive/96/96151685cec997e1f9f3387e3626d61e6284d4d6e66e0e440c209286c03e9cc7.tar.gz ==> Moving resource stage source: /tmp/hansen/spack-stage/resource-xmlts-ycmdvngs7u5vxqvuaowapskassdbyyoy/spack-src/ destination: /tmp/hansen/spack-stage/spack-stage-libxml2-2.10.3-ycmdvngs7u5vxqvuaowapskassdbyyoy/spack-src/xmlconf ==> Ran patch() for libxml2 ==> libxml2: Executing phase: 'autoreconf' ==> libxml2: Executing phase: 'configure' ==> libxml2: Executing phase: 'build' ==> libxml2: Executing phase: 'install' ==> libxml2: Successfully installed libxml2-2.10.3-ycmdvngs7u5vxqvuaowapskassdbyyoy Stage: 1.99s. Autoreconf: 0.00s. Configure: 3.76s. Build: 7.28s. Install: 0.22s. Post-install: 0.10s. Total: 13.40s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libxml2-2.10.3-ycmdvngs7u5vxqvuaowapskassdbyyoy ==> Installing libedit-3.1-20210216-k7a6zijg6a73nnmfguocf3uf7yuzlrm6 [28/87] ==> No binary for libedit-3.1-20210216-k7a6zijg6a73nnmfguocf3uf7yuzlrm6 found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/22/2283f741d2aab935c8c52c04b57bf952d02c2c02e651172f8ac811f77b1fc77a.tar.gz ==> No patches needed for libedit ==> libedit: Executing phase: 'autoreconf' ==> libedit: Executing phase: 'configure' ==> libedit: Executing phase: 'build' ==> libedit: Executing phase: 'install' ==> libedit: Successfully installed libedit-3.1-20210216-k7a6zijg6a73nnmfguocf3uf7yuzlrm6 Stage: 0.56s. Autoreconf: 0.00s. Configure: 4.57s. Build: 2.23s. Install: 0.15s. Post-install: 0.06s. Total: 7.61s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libedit-3.1-20210216-k7a6zijg6a73nnmfguocf3uf7yuzlrm6 ==> Installing readline-8.2-x3d7lizk6sf6duoj2br2x6o6f4fepvp3 [29/87] ==> No binary for readline-8.2-x3d7lizk6sf6duoj2br2x6o6f4fepvp3 found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/3f/3feb7171f16a84ee82ca18a36d7b9be109a52c04f492a053331d7d1095007c35.tar.gz ==> Fetching https://mirror.spack.io/_source-cache/archive/bb/bbf97f1ec40a929edab5aa81998c1e2ef435436c597754916e6a5868f273aff7 ==> Applied patch https://ftpmirror.gnu.org/readline/readline-8.2-patches/readline82-001 ==> readline: Executing phase: 'autoreconf' ==> readline: Executing phase: 'configure' ==> readline: Executing phase: 'build' ==> readline: Executing phase: 'install' ==> readline: Successfully installed readline-8.2-x3d7lizk6sf6duoj2br2x6o6f4fepvp3 Stage: 1.15s. Autoreconf: 0.00s. Configure: 4.15s. Build: 2.05s. Install: 0.07s. Post-install: 0.06s. Total: 7.53s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/readline-8.2-x3d7lizk6sf6duoj2br2x6o6f4fepvp3 ==> Installing expat-2.6.0-6cxz5ubemlkl44ls5w4ghqywb2vrfjwt [30/87] ==> No binary for expat-2.6.0-6cxz5ubemlkl44ls5w4ghqywb2vrfjwt found: installing from source ==> Fetching https://github.com/libexpat/libexpat/releases/download/R_2_6_0/expat-2.6.0.tar.bz2 ==> No patches needed for expat ==> expat: Executing phase: 'autoreconf' ==> expat: Executing phase: 'configure' ==> expat: Executing phase: 'build' ==> expat: Executing phase: 'install' ==> expat: Successfully installed expat-2.6.0-6cxz5ubemlkl44ls5w4ghqywb2vrfjwt Stage: 1.86s. Autoreconf: 0.00s. Configure: 3.85s. Build: 4.10s. Install: 0.20s. Post-install: 0.06s. Total: 10.11s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/expat-2.6.0-6cxz5ubemlkl44ls5w4ghqywb2vrfjwt ==> Installing m4-1.4.19-issmteb345hhl7jficjb46e2wifa4v7f [31/87] ==> No binary for m4-1.4.19-issmteb345hhl7jficjb46e2wifa4v7f found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/3b/3be4a26d825ffdfda52a56fc43246456989a3630093cced3fbddf4771ee58a70.tar.gz ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/m4/checks-198.sysval.1.patch ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/m4/checks-198.sysval.2.patch ==> Ran patch() for m4 ==> m4: Executing phase: 'autoreconf' ==> m4: Executing phase: 'configure' ==> m4: Executing phase: 'build' ==> m4: Executing phase: 'install' ==> m4: Successfully installed m4-1.4.19-issmteb345hhl7jficjb46e2wifa4v7f Stage: 0.69s. Autoreconf: 0.00s. Configure: 25.22s. Build: 3.85s. Install: 0.52s. Post-install: 0.12s. Total: 30.46s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/m4-1.4.19-issmteb345hhl7jficjb46e2wifa4v7f ==> Installing bzip2-1.0.8-zjctsiftp4xmbzz2yd7hc2hbwk4452y3 [32/87] ==> No binary for bzip2-1.0.8-zjctsiftp4xmbzz2yd7hc2hbwk4452y3 found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/ab/ab5a03176ee106d3f0fa90e381da478ddae405918153cca248e682cd0c4a2269.tar.gz ==> Ran patch() for bzip2 ==> bzip2: Executing phase: 'install' ==> bzip2: Successfully installed bzip2-1.0.8-zjctsiftp4xmbzz2yd7hc2hbwk4452y3 Stage: 0.60s. Install: 1.91s. Post-install: 0.10s. Total: 2.63s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/bzip2-1.0.8-zjctsiftp4xmbzz2yd7hc2hbwk4452y3 ==> Installing gdbm-1.23-jwlky7bdkfcay7upf4hw65tbqqo3tzqv [33/87] ==> No binary for gdbm-1.23-jwlky7bdkfcay7upf4hw65tbqqo3tzqv found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/74/74b1081d21fff13ae4bd7c16e5d6e504a4c26f7cde1dca0d963a484174bbcacd.tar.gz ==> No patches needed for gdbm ==> gdbm: Executing phase: 'autoreconf' ==> gdbm: Executing phase: 'configure' ==> gdbm: Executing phase: 'build' ==> gdbm: Executing phase: 'install' ==> gdbm: Successfully installed gdbm-1.23-jwlky7bdkfcay7upf4hw65tbqqo3tzqv Stage: 0.56s. Autoreconf: 0.00s. Configure: 3.57s. Build: 2.27s. Install: 0.43s. Post-install: 0.12s. Total: 7.00s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/gdbm-1.23-jwlky7bdkfcay7upf4hw65tbqqo3tzqv ==> Installing sqlite-3.43.2-m3lobilknlza3fkoxcyuv2llgeztgpah [34/87] ==> No binary for sqlite-3.43.2-m3lobilknlza3fkoxcyuv2llgeztgpah found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/6d/6d422b6f62c4de2ca80d61860e3a3fb693554d2f75bb1aaca743ccc4d6f609f0.tar.gz ==> No patches needed for sqlite ==> sqlite: Executing phase: 'autoreconf' ==> sqlite: Executing phase: 'configure' ==> sqlite: Executing phase: 'build' ==> sqlite: Executing phase: 'install' ==> sqlite: Successfully installed sqlite-3.43.2-m3lobilknlza3fkoxcyuv2llgeztgpah Stage: 0.71s. Autoreconf: 0.00s. Configure: 2.77s. Build: 1m 6.44s. Install: 0.13s. Post-install: 0.13s. Total: 1m 10.23s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/sqlite-3.43.2-m3lobilknlza3fkoxcyuv2llgeztgpah ==> Installing bison-3.8.2-4irymqn66hfsg4zquitgolapu6qsvrga [35/87] ==> No binary for bison-3.8.2-4irymqn66hfsg4zquitgolapu6qsvrga found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/06/06c9e13bdf7eb24d4ceb6b59205a4f67c2c7e7213119644430fe82fbd14a0abb.tar.gz ==> No patches needed for bison ==> bison: Executing phase: 'autoreconf' ==> bison: Executing phase: 'configure' ==> bison: Executing phase: 'build' ==> bison: Executing phase: 'install' ==> bison: Successfully installed bison-3.8.2-4irymqn66hfsg4zquitgolapu6qsvrga Stage: 1.05s. Autoreconf: 0.00s. Configure: 20.58s. Build: 2.98s. Install: 0.85s. Post-install: 0.18s. Total: 25.68s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/bison-3.8.2-4irymqn66hfsg4zquitgolapu6qsvrga ==> Installing libtool-2.4.7-rpp6lkavgfhwjyluko6wxodierbkdfry [36/87] ==> No binary for libtool-2.4.7-rpp6lkavgfhwjyluko6wxodierbkdfry found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/04/04e96c2404ea70c590c546eba4202a4e12722c640016c12b9b2f1ce3d481e9a8.tar.gz ==> Ran patch() for libtool ==> libtool: Executing phase: 'autoreconf' ==> libtool: Executing phase: 'configure' ==> libtool: Executing phase: 'build' ==> libtool: Executing phase: 'install' ==> libtool: Successfully installed libtool-2.4.7-rpp6lkavgfhwjyluko6wxodierbkdfry Stage: 0.62s. Autoreconf: 0.00s. Configure: 5.10s. Build: 1.05s. Install: 0.34s. Post-install: 0.12s. Total: 7.27s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libtool-2.4.7-rpp6lkavgfhwjyluko6wxodierbkdfry ==> Installing tar-1.34-k3kagko73uqyyrso37vt2jjwqlrorkst [37/87] ==> No binary for tar-1.34-k3kagko73uqyyrso37vt2jjwqlrorkst found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/03/03d908cf5768cfe6b7ad588c921c6ed21acabfb2b79b788d1330453507647aed.tar.gz ==> No patches needed for tar ==> tar: Executing phase: 'autoreconf' ==> tar: Executing phase: 'configure' ==> tar: Executing phase: 'build' ==> tar: Executing phase: 'install' ==> tar: Successfully installed tar-1.34-k3kagko73uqyyrso37vt2jjwqlrorkst Stage: 0.81s. Autoreconf: 0.00s. Configure: 23.44s. Build: 4.69s. Install: 0.47s. Post-install: 0.14s. Total: 29.61s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/tar-1.34-k3kagko73uqyyrso37vt2jjwqlrorkst ==> Installing perl-5.38.0-xl6u6pbqmcoggovzxxac2tuanhqexiwx [38/87] ==> No binary for perl-5.38.0-xl6u6pbqmcoggovzxxac2tuanhqexiwx found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/21/213ef58089d2f2c972ea353517dc60ec3656f050dcc027666e118b508423e517.tar.gz ==> Fetching https://mirror.spack.io/_source-cache/archive/9d/9da50e155df72bce55cb69f51f1dbb4b62d23740fb99f6178bb27f22ebdf8a46.tar.gz ==> Moving resource stage source: /tmp/hansen/spack-stage/resource-cpanm-xl6u6pbqmcoggovzxxac2tuanhqexiwx/spack-src/ destination: /tmp/hansen/spack-stage/spack-stage-perl-5.38.0-xl6u6pbqmcoggovzxxac2tuanhqexiwx/spack-src/cpanm/cpanm ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/perl/zlib-ng.patch ==> Ran patch() for perl ==> perl: Executing phase: 'configure' ==> perl: Executing phase: 'build' ==> perl: Executing phase: 'install' ==> perl: Successfully installed perl-5.38.0-xl6u6pbqmcoggovzxxac2tuanhqexiwx Stage: 2.34s. Configure: 38.36s. Build: 40.45s. Install: 18.29s. Post-install: 0.64s. Total: 1m 40.20s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/perl-5.38.0-xl6u6pbqmcoggovzxxac2tuanhqexiwx ==> Installing libpciaccess-0.17-ydanjvfdy6ulpsqm4nyycnq57goteb2s [39/87] ==> No binary for libpciaccess-0.17-ydanjvfdy6ulpsqm4nyycnq57goteb2s found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/bf/bf6985a77d2ecb00e2c79da3edfb26b909178ffca3f2e9d14ed0620259ab733b.tar.gz ==> No patches needed for libpciaccess ==> libpciaccess: Executing phase: 'autoreconf' ==> libpciaccess: Executing phase: 'configure' ==> libpciaccess: Executing phase: 'build' ==> libpciaccess: Executing phase: 'install' ==> libpciaccess: Successfully installed libpciaccess-0.17-ydanjvfdy6ulpsqm4nyycnq57goteb2s Stage: 0.61s. Autoreconf: 0.00s. Configure: 3.34s. Build: 0.84s. Install: 0.12s. Post-install: 0.05s. Total: 5.08s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libpciaccess-0.17-ydanjvfdy6ulpsqm4nyycnq57goteb2s ==> Installing gettext-0.22.4-qoh5updjj6ybfyy5v4kjw4ks5riji424 [40/87] ==> No binary for gettext-0.22.4-qoh5updjj6ybfyy5v4kjw4ks5riji424 found: installing from source ==> Fetching https://ftpmirror.gnu.org/gettext/gettext-0.22.4.tar.xz ==> No patches needed for gettext ==> gettext: Executing phase: 'autoreconf' ==> gettext: Executing phase: 'configure' ==> gettext: Executing phase: 'build' ==> gettext: Executing phase: 'install' ==> gettext: Successfully installed gettext-0.22.4-qoh5updjj6ybfyy5v4kjw4ks5riji424 Stage: 1m 34.25s. Autoreconf: 0.00s. Configure: 1m 18.33s. Build: 1m 30.47s. Install: 11.27s. Post-install: 0.51s. Total: 4m 34.92s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/gettext-0.22.4-qoh5updjj6ybfyy5v4kjw4ks5riji424 ==> Installing autoconf-2.72-uzq2sfq7xy3tg2iclrxfvdmgh2kjc7b6 [41/87] ==> No binary for autoconf-2.72-uzq2sfq7xy3tg2iclrxfvdmgh2kjc7b6 found: installing from source ==> Fetching https://ftpmirror.gnu.org/autoconf/autoconf-2.72.tar.gz ==> Ran patch() for autoconf ==> autoconf: Executing phase: 'autoreconf' ==> autoconf: Executing phase: 'configure' ==> autoconf: Executing phase: 'build' ==> autoconf: Executing phase: 'install' ==> autoconf: Successfully installed autoconf-2.72-uzq2sfq7xy3tg2iclrxfvdmgh2kjc7b6 Stage: 17.23s. Autoreconf: 0.00s. Configure: 1.22s. Build: 0.19s. Install: 0.10s. Post-install: 0.08s. Total: 18.88s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/autoconf-2.72-uzq2sfq7xy3tg2iclrxfvdmgh2kjc7b6 ==> Installing openssl-3.2.1-d5sak257tn7dfyx35m7ccv7gru242q3y [42/87] ==> No binary for openssl-3.2.1-d5sak257tn7dfyx35m7ccv7gru242q3y found: installing from source ==> Fetching http://www.openssl.org/source/openssl-3.2.1.tar.gz ==> Ran patch() for openssl ==> openssl: Executing phase: 'install' ==> openssl: Successfully installed openssl-3.2.1-d5sak257tn7dfyx35m7ccv7gru242q3y Stage: 2.39s. Install: 1m 12.68s. Post-install: 0.11s. Total: 1m 15.24s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openssl-3.2.1-d5sak257tn7dfyx35m7ccv7gru242q3y ==> Installing libxcrypt-4.4.35-rvxfkl7yo7oycgxxlrjhbmafuvhollkp [43/87] ==> No binary for libxcrypt-4.4.35-rvxfkl7yo7oycgxxlrjhbmafuvhollkp found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/a8/a8c935505b55f1df0d17f8bfd59468c7c6709a1d31831b0f8e3e045ab8fd455d.tar.xz ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/libxcrypt/commit-95d56e0.patch ==> libxcrypt: Executing phase: 'autoreconf' ==> libxcrypt: Executing phase: 'configure' ==> libxcrypt: Executing phase: 'build' ==> libxcrypt: Executing phase: 'install' ==> libxcrypt: Successfully installed libxcrypt-4.4.35-rvxfkl7yo7oycgxxlrjhbmafuvhollkp Stage: 0.56s. Autoreconf: 0.00s. Configure: 3.91s. Build: 2.29s. Install: 0.13s. Post-install: 0.06s. Total: 7.02s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libxcrypt-4.4.35-rvxfkl7yo7oycgxxlrjhbmafuvhollkp ==> Installing openblas-0.3.26-nrav47qqimucx2zngqarm7aa7a4ub257 [44/87] ==> No binary for openblas-0.3.26-nrav47qqimucx2zngqarm7aa7a4ub257 found: installing from source ==> Fetching https://github.com/OpenMathLib/OpenBLAS/releases/download/v0.3.26/OpenBLAS-0.3.26.tar.gz ==> No patches needed for openblas ==> openblas: Executing phase: 'edit' ==> openblas: Executing phase: 'build' ==> openblas: Executing phase: 'install' ==> openblas: Successfully installed openblas-0.3.26-nrav47qqimucx2zngqarm7aa7a4ub257 Stage: 3.29s. Edit: 0.00s. Build: 2m 20.40s. Install: 1.36s. Post-install: 0.10s. Total: 2m 25.20s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openblas-0.3.26-nrav47qqimucx2zngqarm7aa7a4ub257 ==> Installing hwloc-2.9.1-3h5cr5n3awallyys36lbn6ix6zttphdv [45/87] ==> No binary for hwloc-2.9.1-3h5cr5n3awallyys36lbn6ix6zttphdv found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/a4/a440e2299f7451dc10a57ddbfa3f116c2a6c4be1bb97c663edd3b9c7b3b3b4cf.tar.gz ==> No patches needed for hwloc ==> hwloc: Executing phase: 'autoreconf' ==> hwloc: Executing phase: 'configure' ==> hwloc: Executing phase: 'build' ==> hwloc: Executing phase: 'install' ==> hwloc: Successfully installed hwloc-2.9.1-3h5cr5n3awallyys36lbn6ix6zttphdv Stage: 1.06s. Autoreconf: 0.00s. Configure: 9.55s. Build: 7.38s. Install: 0.59s. Post-install: 0.17s. Total: 18.83s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/hwloc-2.9.1-3h5cr5n3awallyys36lbn6ix6zttphdv ==> Installing automake-1.16.5-mpghbw7v6lkpe6mor24sj6zr2nhfv3fj [46/87] ==> No binary for automake-1.16.5-mpghbw7v6lkpe6mor24sj6zr2nhfv3fj found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/07/07bd24ad08a64bc17250ce09ec56e921d6343903943e99ccf63bbf0705e34605.tar.gz ==> Ran patch() for automake ==> automake: Executing phase: 'autoreconf' ==> automake: Executing phase: 'configure' ==> automake: Executing phase: 'build' ==> automake: Executing phase: 'install' ==> automake: Successfully installed automake-1.16.5-mpghbw7v6lkpe6mor24sj6zr2nhfv3fj Stage: 0.72s. Autoreconf: 0.00s. Configure: 1.53s. Build: 0.28s. Install: 0.13s. Post-install: 0.09s. Total: 2.81s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/automake-1.16.5-mpghbw7v6lkpe6mor24sj6zr2nhfv3fj ==> Installing curl-8.6.0-4k2ojqtb64w2gps2hpq3bzd5vo2f2uoo [47/87] ==> No binary for curl-8.6.0-4k2ojqtb64w2gps2hpq3bzd5vo2f2uoo found: installing from source ==> Fetching http://curl.haxx.se/download/curl-8.6.0.tar.bz2 ==> No patches needed for curl ==> curl: Executing phase: 'autoreconf' ==> curl: Executing phase: 'configure' ==> curl: Executing phase: 'build' ==> curl: Executing phase: 'install' ==> curl: Successfully installed curl-8.6.0-4k2ojqtb64w2gps2hpq3bzd5vo2f2uoo Stage: 2.02s. Autoreconf: 0.00s. Configure: 15.55s. Build: 10.93s. Install: 0.75s. Post-install: 0.16s. Total: 29.49s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/curl-8.6.0-4k2ojqtb64w2gps2hpq3bzd5vo2f2uoo ==> Installing libevent-2.1.12-px5iznoopadzogfxhw7fqbblcygrdm7f [48/87] ==> No binary for libevent-2.1.12-px5iznoopadzogfxhw7fqbblcygrdm7f found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/92/92e6de1be9ec176428fd2367677e61ceffc2ee1cb119035037a27d346b0403bb.tar.gz ==> Ran patch() for libevent ==> libevent: Executing phase: 'autoreconf' ==> libevent: Executing phase: 'configure' ==> libevent: Executing phase: 'build' ==> libevent: Executing phase: 'install' ==> libevent: Successfully installed libevent-2.1.12-px5iznoopadzogfxhw7fqbblcygrdm7f Stage: 0.60s. Autoreconf: 0.00s. Configure: 8.04s. Build: 5.90s. Install: 0.28s. Post-install: 0.07s. Total: 14.96s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libevent-2.1.12-px5iznoopadzogfxhw7fqbblcygrdm7f ==> Installing krb5-1.20.1-fwlkdjmxrhlvpx3mih7fiojjp6nslc57 [49/87] ==> No binary for krb5-1.20.1-fwlkdjmxrhlvpx3mih7fiojjp6nslc57 found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/70/704aed49b19eb5a7178b34b2873620ec299db08752d6a8574f95d41879ab8851.tar.gz ==> Ran patch() for krb5 ==> krb5: Executing phase: 'autoreconf' ==> krb5: Executing phase: 'configure' ==> krb5: Executing phase: 'build' ==> krb5: Executing phase: 'install' ==> krb5: Successfully installed krb5-1.20.1-fwlkdjmxrhlvpx3mih7fiojjp6nslc57 Stage: 1.03s. Autoreconf: 0.00s. Configure: 11.48s. Build: 14.50s. Install: 0.90s. Post-install: 0.11s. Total: 28.12s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/krb5-1.20.1-fwlkdjmxrhlvpx3mih7fiojjp6nslc57 ==> Installing python-3.11.7-gg7rx5cko2llgvquprgp7zxxaswty4vm [50/87] ==> No binary for python-3.11.7-gg7rx5cko2llgvquprgp7zxxaswty4vm found: installing from source ==> Fetching https://www.python.org/ftp/python/3.11.7/Python-3.11.7.tgz ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/python/python-3.7.4+-distutils-C++-testsuite.patch ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/python/python-3.11-distutils-C++.patch ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/python/tkinter-3.11.patch ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/python/rpath-non-gcc.patch ==> Ran patch() for python ==> python: Executing phase: 'configure' ==> python: Executing phase: 'build' ==> python: Executing phase: 'install' ==> python: Successfully installed python-3.11.7-gg7rx5cko2llgvquprgp7zxxaswty4vm Stage: 2.48s. Configure: 25.53s. Build: 31.43s. Install: 10.00s. Post-install: 1.83s. Total: 1m 11.38s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/python-3.11.7-gg7rx5cko2llgvquprgp7zxxaswty4vm ==> Installing numactl-2.0.14-mjc7e4gbjp5r3lgqmgf4a5lkexoy2wtu [51/87] ==> No binary for numactl-2.0.14-mjc7e4gbjp5r3lgqmgf4a5lkexoy2wtu found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/1e/1ee27abd07ff6ba140aaf9bc6379b37825e54496e01d6f7343330cf1a4487035.tar.gz ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/numactl/numactl-2.0.14-symver.patch ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/numactl/fix-empty-block.patch ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/numactl/link-with-latomic-if-needed.patch ==> numactl: Executing phase: 'autoreconf' ==> numactl: Executing phase: 'configure' ==> numactl: Executing phase: 'build' ==> numactl: Executing phase: 'install' ==> numactl: Successfully installed numactl-2.0.14-mjc7e4gbjp5r3lgqmgf4a5lkexoy2wtu Stage: 0.46s. Autoreconf: 3.56s. Configure: 1.98s. Build: 1.37s. Install: 0.20s. Post-install: 0.07s. Total: 7.71s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/numactl-2.0.14-mjc7e4gbjp5r3lgqmgf4a5lkexoy2wtu ==> Installing cmake-3.27.9-ewpqzo3yvu3tuldau6qynye6nu7urdme [52/87] ==> No binary for cmake-3.27.9-ewpqzo3yvu3tuldau6qynye6nu7urdme found: installing from source ==> Fetching https://github.com/Kitware/CMake/releases/download/v3.27.9/cmake-3.27.9.tar.gz ==> No patches needed for cmake ==> cmake: Executing phase: 'bootstrap' ==> cmake: Executing phase: 'build' ==> cmake: Executing phase: 'install' ==> cmake: Successfully installed cmake-3.27.9-ewpqzo3yvu3tuldau6qynye6nu7urdme Stage: 2.88s. Bootstrap: 1m 11.20s. Build: 2m 50.33s. Install: 1.93s. Post-install: 0.76s. Total: 4m 7.16s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/cmake-3.27.9-ewpqzo3yvu3tuldau6qynye6nu7urdme ==> Installing pmix-5.0.1-ua37ffwi64ixnh2v4lxp4xtvm3icuetx [53/87] ==> No binary for pmix-5.0.1-ua37ffwi64ixnh2v4lxp4xtvm3icuetx found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/d4/d4371792d4ba4c791e1010100b4bf9a65500ababaf5ff25d681f938527a67d4a.tar.bz2 ==> No patches needed for pmix ==> pmix: Executing phase: 'autoreconf' ==> pmix: Executing phase: 'configure' ==> pmix: Executing phase: 'build' ==> pmix: Executing phase: 'install' ==> pmix: Successfully installed pmix-5.0.1-ua37ffwi64ixnh2v4lxp4xtvm3icuetx Stage: 1.34s. Autoreconf: 0.00s. Configure: 16.38s. Build: 49.72s. Install: 2.71s. Post-install: 0.16s. Total: 1m 10.42s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pmix-5.0.1-ua37ffwi64ixnh2v4lxp4xtvm3icuetx ==> Installing openssh-9.5p1-6pd756zztfwpjio3h2aeh6ndvbur6tkf [54/87] ==> No binary for openssh-9.5p1-6pd756zztfwpjio3h2aeh6ndvbur6tkf found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/f0/f026e7b79ba7fb540f75182af96dc8a8f1db395f922bbc9f6ca603672686086b.tar.gz ==> Ran patch() for openssh ==> openssh: Executing phase: 'autoreconf' ==> openssh: Executing phase: 'configure' ==> openssh: Executing phase: 'build' ==> openssh: Executing phase: 'install' ==> openssh: Successfully installed openssh-9.5p1-6pd756zztfwpjio3h2aeh6ndvbur6tkf Stage: 0.66s. Autoreconf: 0.00s. Configure: 22.39s. Build: 6.46s. Install: 0.24s. Post-install: 0.09s. Total: 29.93s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openssh-9.5p1-6pd756zztfwpjio3h2aeh6ndvbur6tkf ==> Installing ninja-1.11.1-gtqr5pgjw23aimzv7m7yvdb4xdxxqelm [55/87] ==> No binary for ninja-1.11.1-gtqr5pgjw23aimzv7m7yvdb4xdxxqelm found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/31/31747ae633213f1eda3842686f83c2aa1412e0f5691d1c14dbbcc67fe7400cea.tar.gz ==> No patches needed for ninja ==> ninja: Executing phase: 'configure' ==> ninja: Executing phase: 'install' ==> ninja: Successfully installed ninja-1.11.1-gtqr5pgjw23aimzv7m7yvdb4xdxxqelm Stage: 0.49s. Configure: 23.43s. Install: 0.01s. Post-install: 0.08s. Total: 24.10s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/ninja-1.11.1-gtqr5pgjw23aimzv7m7yvdb4xdxxqelm ==> Installing esp-121Lin-yr5glnvdn2ltryzhdlikvhpo5set6glv [56/87] ==> No binary for esp-121Lin-yr5glnvdn2ltryzhdlikvhpo5set6glv found: installing from source ==> Fetching https://acdl.mit.edu/ESP/archive/ESP121Lin.tgz ==> No patches needed for esp ==> esp: Executing phase: 'install' ==> esp: Successfully installed esp-121Lin-yr5glnvdn2ltryzhdlikvhpo5set6glv Stage: 20.25s. Install: 0.59s. Post-install: 1.08s. Total: 21.99s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/esp-121Lin-yr5glnvdn2ltryzhdlikvhpo5set6glv ==> Installing py-pip-23.1.2-ti7eegllr2kj3j5atslreuyd3k7pcghi [57/87] ==> No binary for py-pip-23.1.2-ti7eegllr2kj3j5atslreuyd3k7pcghi found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/3e/3ef6ac33239e4027d9a5598a381b9d30880a1477e50039db2eac6e8a8f6d1b18 ==> No patches needed for py-pip ==> py-pip: Executing phase: 'install' ==> py-pip: Successfully installed py-pip-23.1.2-ti7eegllr2kj3j5atslreuyd3k7pcghi Stage: 0.58s. Install: 2.45s. Post-install: 0.29s. Total: 3.40s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/py-pip-23.1.2-ti7eegllr2kj3j5atslreuyd3k7pcghi ==> Installing libaec-1.0.6-s5pgobvcuvfeibjejqbuatkrfaj63zhe [58/87] ==> No binary for libaec-1.0.6-s5pgobvcuvfeibjejqbuatkrfaj63zhe found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/ab/abab8c237d85c982bb4d6bde9b03c1f3d611dcacbd58bca55afac2496d61d4be.tar.gz ==> No patches needed for libaec ==> libaec: Executing phase: 'cmake' ==> libaec: Executing phase: 'build' ==> libaec: Executing phase: 'install' ==> libaec: Successfully installed libaec-1.0.6-s5pgobvcuvfeibjejqbuatkrfaj63zhe Stage: 0.69s. Cmake: 0.34s. Build: 0.66s. Install: 0.07s. Post-install: 0.06s. Total: 1.89s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libaec-1.0.6-s5pgobvcuvfeibjejqbuatkrfaj63zhe ==> Installing snappy-1.1.10-x3fx7k4pivzstworumpgwt7qkveh4z6z [59/87] ==> No binary for snappy-1.1.10-x3fx7k4pivzstworumpgwt7qkveh4z6z found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/49/49d831bffcc5f3d01482340fe5af59852ca2fe76c3e05df0e67203ebbe0f1d90.tar.gz ==> No patches needed for snappy ==> snappy: Executing phase: 'cmake' ==> snappy: Executing phase: 'build' ==> snappy: Executing phase: 'install' ==> snappy: Successfully installed snappy-1.1.10-x3fx7k4pivzstworumpgwt7qkveh4z6z Stage: 1.00s. Cmake: 2.01s. Build: 1.30s. Install: 0.04s. Post-install: 0.06s. Total: 4.47s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/snappy-1.1.10-x3fx7k4pivzstworumpgwt7qkveh4z6z ==> Installing googletest-1.12.1-oksz7ynt4vten6mkosjoby776hu25hoy [60/87] ==> No binary for googletest-1.12.1-oksz7ynt4vten6mkosjoby776hu25hoy found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/81/81964fe578e9bd7c94dfdb09c8e4d6e6759e19967e397dbea48d1c10e45d0df2.tar.gz ==> No patches needed for googletest ==> googletest: Executing phase: 'cmake' ==> googletest: Executing phase: 'build' ==> googletest: Executing phase: 'install' ==> googletest: Successfully installed googletest-1.12.1-oksz7ynt4vten6mkosjoby776hu25hoy Stage: 0.62s. Cmake: 0.60s. Build: 9.40s. Install: 0.07s. Post-install: 0.07s. Total: 10.84s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/googletest-1.12.1-oksz7ynt4vten6mkosjoby776hu25hoy ==> Installing metis-5.1.0-jiupi4wymugjyfjyjwl43royvfsnqnbr [61/87] ==> No binary for metis-5.1.0-jiupi4wymugjyfjyjwl43royvfsnqnbr found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/76/76faebe03f6c963127dbb73c13eab58c9a3faeae48779f049066a21c087c5db2.tar.gz ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/metis/gklib_path.patch ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/metis/install_gklib_defs_rename.patch ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/metis/gklib_nomisleadingindentation_warning.patch ==> Ran patch() for metis ==> metis: Executing phase: 'cmake' ==> metis: Executing phase: 'build' ==> metis: Executing phase: 'install' ==> metis: Successfully installed metis-5.1.0-jiupi4wymugjyfjyjwl43royvfsnqnbr Stage: 0.87s. Cmake: 0.47s. Build: 2.43s. Install: 0.10s. Post-install: 0.07s. Total: 4.00s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/metis-5.1.0-jiupi4wymugjyfjyjwl43royvfsnqnbr ==> Installing netlib-lapack-3.11.0-f7evgtznh6xwaa2vz35rt5qxeuprknen [62/87] ==> No binary for netlib-lapack-3.11.0-f7evgtznh6xwaa2vz35rt5qxeuprknen found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/4b/4b9ba79bfd4921ca820e83979db76ab3363155709444a787979e81c22285ffa9.tar.gz ==> Ran patch() for netlib-lapack ==> netlib-lapack: Executing phase: 'cmake' ==> netlib-lapack: Executing phase: 'build' ==> netlib-lapack: Executing phase: 'install' ==> netlib-lapack: Successfully installed netlib-lapack-3.11.0-f7evgtznh6xwaa2vz35rt5qxeuprknen Stage: 1.25s. Cmake: 2.69s. Build: 1m 20.66s. Install: 0.97s. Post-install: 0.08s. Total: 1m 25.74s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/netlib-lapack-3.11.0-f7evgtznh6xwaa2vz35rt5qxeuprknen ==> Installing arborx-v1.1-ra5eavszdw2e3pf6pxjnrr7ihd4o3r36 [63/87] ==> No binary for arborx-v1.1-ra5eavszdw2e3pf6pxjnrr7ihd4o3r36 found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/2b/2b5f2d2d5cec57c52f470c2bf4f42621b40271f870b4f80cb57e52df1acd90ce.tar.gz ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/plato/packages/arborx/v1.1-header_only.patch ==> arborx: Executing phase: 'cmake' ==> arborx: Executing phase: 'build' ==> arborx: Executing phase: 'install' ==> arborx: Successfully installed arborx-v1.1-ra5eavszdw2e3pf6pxjnrr7ihd4o3r36 Stage: 0.54s. Cmake: 0.16s. Build: 0.03s. Install: 0.04s. Post-install: 0.07s. Total: 0.89s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/arborx-v1.1-ra5eavszdw2e3pf6pxjnrr7ihd4o3r36 ==> Installing openmpi-5.0.2-bqnrpm4r5vrxybpducugzn2pj4wdjijy [64/87] ==> No binary for openmpi-5.0.2-bqnrpm4r5vrxybpducugzn2pj4wdjijy found: installing from source ==> Fetching https://download.open-mpi.org/release/open-mpi/v5.0/openmpi-5.0.2.tar.bz2 ==> No patches needed for openmpi ==> openmpi: Executing phase: 'autoreconf' ==> openmpi: Executing phase: 'configure' ==> openmpi: Executing phase: 'build' ==> openmpi: Executing phase: 'install' ==> openmpi: Successfully installed openmpi-5.0.2-bqnrpm4r5vrxybpducugzn2pj4wdjijy Stage: 5.84s. Autoreconf: 0.00s. Configure: 1m 7.56s. Build: 2m 13.09s. Install: 12.69s. Post-install: 0.62s. Total: 3m 40.05s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openmpi-5.0.2-bqnrpm4r5vrxybpducugzn2pj4wdjijy ==> Installing py-setuptools-68.0.0-yvlxuc4oqdzjl6a53fgigyjykljd7epv [65/87] ==> No binary for py-setuptools-68.0.0-yvlxuc4oqdzjl6a53fgigyjykljd7epv found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/11/11e52c67415a381d10d6b462ced9cfb97066179f0e871399e006c4ab101fc85f ==> No patches needed for py-setuptools ==> py-setuptools: Executing phase: 'install' ==> py-setuptools: Successfully installed py-setuptools-68.0.0-yvlxuc4oqdzjl6a53fgigyjykljd7epv Stage: 0.46s. Install: 0.83s. Post-install: 0.17s. Total: 1.54s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/py-setuptools-68.0.0-yvlxuc4oqdzjl6a53fgigyjykljd7epv ==> Installing py-wheel-0.41.2-u3g7gdd6tl5ublcyvnyhp67b467sdjdn [66/87] ==> No binary for py-wheel-0.41.2-u3g7gdd6tl5ublcyvnyhp67b467sdjdn found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/75/75909db2664838d015e3d9139004ee16711748a52c8f336b52882266540215d8 ==> No patches needed for py-wheel ==> py-wheel: Executing phase: 'install' ==> py-wheel: Successfully installed py-wheel-0.41.2-u3g7gdd6tl5ublcyvnyhp67b467sdjdn Stage: 0.30s. Install: 0.43s. Post-install: 0.08s. Total: 0.90s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/py-wheel-0.41.2-u3g7gdd6tl5ublcyvnyhp67b467sdjdn ==> Installing c-blosc-1.21.5-ysycdakgaa52nqpqjiy2oabroagaqqpj [67/87] ==> No binary for c-blosc-1.21.5-ysycdakgaa52nqpqjiy2oabroagaqqpj found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/32/32e61961bbf81ffea6ff30e9d70fca36c86178afd3e3cfa13376adec8c687509.tar.gz ==> No patches needed for c-blosc ==> c-blosc: Executing phase: 'cmake' ==> c-blosc: Executing phase: 'build' ==> c-blosc: Executing phase: 'install' ==> c-blosc: Successfully installed c-blosc-1.21.5-ysycdakgaa52nqpqjiy2oabroagaqqpj Stage: 0.73s. Cmake: 0.26s. Build: 1.25s. Install: 0.05s. Post-install: 0.06s. Total: 2.43s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/c-blosc-1.21.5-ysycdakgaa52nqpqjiy2oabroagaqqpj ==> Installing Tpmumps-3.0.4-jb2nlzfogfkkucrk3iavgfhjxhpepnxr [68/87] ==> No binary for Tpmumps-3.0.4-jb2nlzfogfkkucrk3iavgfhjxhpepnxr found: installing from source ==> No patches needed for Tpmumps ==> Tpmumps: Executing phase: 'autoreconf' ==> Tpmumps: Executing phase: 'configure' ==> Tpmumps: Executing phase: 'build' ==> Tpmumps: Executing phase: 'install' ==> Tpmumps: Successfully installed Tpmumps-3.0.4-jb2nlzfogfkkucrk3iavgfhjxhpepnxr Stage: 1.25s. Autoreconf: 0.90s. Configure: 2.97s. Build: 19.63s. Install: 0.11s. Post-install: 0.08s. Total: 25.02s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/Tpmumps-3.0.4-jb2nlzfogfkkucrk3iavgfhjxhpepnxr ==> Installing parallel-netcdf-1.12.3-gbtlvaff5crg6teep3ll6rq3ubqeer2g [69/87] ==> No binary for parallel-netcdf-1.12.3-gbtlvaff5crg6teep3ll6rq3ubqeer2g found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/43/439e359d09bb93d0e58a6e3f928f39c2eae965b6c97f64e67cd42220d6034f77.tar.gz ==> No patches needed for parallel-netcdf ==> parallel-netcdf: Executing phase: 'autoreconf' ==> parallel-netcdf: Executing phase: 'configure' ==> parallel-netcdf: Executing phase: 'build' ==> parallel-netcdf: Executing phase: 'install' ==> parallel-netcdf: Successfully installed parallel-netcdf-1.12.3-gbtlvaff5crg6teep3ll6rq3ubqeer2g Stage: 0.66s. Autoreconf: 0.00s. Configure: 13.31s. Build: 38.26s. Install: 0.67s. Post-install: 0.11s. Total: 53.14s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/parallel-netcdf-1.12.3-gbtlvaff5crg6teep3ll6rq3ubqeer2g ==> Installing parmetis-4.0.3-p3dgo5z7omsnd5saouopq76wxr62qkrq [70/87] ==> No binary for parmetis-4.0.3-p3dgo5z7omsnd5saouopq76wxr62qkrq found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/f2/f2d9a231b7cf97f1fee6e8c9663113ebf6c240d407d3c118c55b3633d6be6e5f.tar.gz ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/parmetis/enable_external_metis.patch ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/parmetis/pkg-parmetis-1c1a9fd0f408dc4d42c57f5c3ee6ace411eb222b.patch ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/parmetis/pkg-parmetis-82409d68aa1d6cbc70740d0f35024aae17f7d5cb.patch ==> parmetis: Executing phase: 'cmake' ==> parmetis: Executing phase: 'build' ==> parmetis: Executing phase: 'install' ==> parmetis: Successfully installed parmetis-4.0.3-p3dgo5z7omsnd5saouopq76wxr62qkrq Stage: 0.96s. Cmake: 0.38s. Build: 2.46s. Install: 0.08s. Post-install: 0.08s. Total: 4.10s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/parmetis-4.0.3-p3dgo5z7omsnd5saouopq76wxr62qkrq ==> Installing hdf5-1.12.2-pklvmrj7niulq25rao3nlvpkbufzg5bb [71/87] ==> No binary for hdf5-1.12.2-pklvmrj7niulq25rao3nlvpkbufzg5bb found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/2a/2a89af03d56ce7502dcae18232c241281ad1773561ec00c0f0e8ee2463910f14.tar.gz ==> Ran patch() for hdf5 ==> hdf5: Executing phase: 'cmake' ==> hdf5: Executing phase: 'build' ==> hdf5: Executing phase: 'install' ==> hdf5: Successfully installed hdf5-1.12.2-pklvmrj7niulq25rao3nlvpkbufzg5bb Stage: 1.76s. Cmake: 11.97s. Build: 50.93s. Install: 0.68s. Post-install: 0.23s. Total: 1m 5.72s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/hdf5-1.12.2-pklvmrj7niulq25rao3nlvpkbufzg5bb ==> Installing py-cython-3.0.8-n4nlp2cqj4wkng7g4jbd3vqxjbheigeh [72/87] ==> No binary for py-cython-3.0.8-n4nlp2cqj4wkng7g4jbd3vqxjbheigeh found: installing from source ==> Fetching https://files.pythonhosted.org/packages/source/c/cython/Cython-3.0.8.tar.gz ==> No patches needed for py-cython ==> py-cython: Executing phase: 'install' ==> py-cython: Successfully installed py-cython-3.0.8-n4nlp2cqj4wkng7g4jbd3vqxjbheigeh Stage: 1.09s. Install: 2m 49.97s. Post-install: 0.21s. Total: 2m 51.34s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/py-cython-3.0.8-n4nlp2cqj4wkng7g4jbd3vqxjbheigeh ==> Installing py-flit-core-3.9.0-w6hzbomwmzzauniw37t4qhqek2s5maol [73/87] ==> No binary for py-flit-core-3.9.0-w6hzbomwmzzauniw37t4qhqek2s5maol found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/72/72ad266176c4a3fcfab5f2930d76896059851240570ce9a98733b658cb786eba.tar.gz ==> No patches needed for py-flit-core ==> py-flit-core: Executing phase: 'install' ==> py-flit-core: Successfully installed py-flit-core-3.9.0-w6hzbomwmzzauniw37t4qhqek2s5maol Stage: 0.40s. Install: 0.64s. Post-install: 0.11s. Total: 1.23s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/py-flit-core-3.9.0-w6hzbomwmzzauniw37t4qhqek2s5maol ==> Installing meson-1.2.2-zga7tvvmr7sn642pm2pes7gxsf5brn4i [74/87] ==> No binary for meson-1.2.2-zga7tvvmr7sn642pm2pes7gxsf5brn4i found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/1c/1caa0ef6082e311bdca9836e7907f548b8c3f041a42ed41f0ff916b83ac7dddd.tar.gz ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/meson/rpath-0.64.patch ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/meson/python-3.12-support.patch ==> meson: Executing phase: 'install' ==> meson: Successfully installed meson-1.2.2-zga7tvvmr7sn642pm2pes7gxsf5brn4i Stage: 0.94s. Install: 1.75s. Post-install: 0.17s. Total: 2.95s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/meson-1.2.2-zga7tvvmr7sn642pm2pes7gxsf5brn4i ==> Installing ipopt-3.14.5-54hqusk4eatd55xbvk2rsqenfbchslsw [75/87] ==> No binary for ipopt-3.14.5-54hqusk4eatd55xbvk2rsqenfbchslsw found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/9e/9ebbbbf14a64e998e3fba5d2662a8f9bd03f97b1406017e78ae54e5d105ae932.tar.gz ==> No patches needed for ipopt ==> ipopt: Executing phase: 'autoreconf' ==> ipopt: Executing phase: 'configure' ==> ipopt: Executing phase: 'build' ==> ipopt: Executing phase: 'install' ==> ipopt: Successfully installed ipopt-3.14.5-54hqusk4eatd55xbvk2rsqenfbchslsw Stage: 0.54s. Autoreconf: 0.00s. Configure: 6.16s. Build: 1m 52.81s. Install: 0.58s. Post-install: 0.09s. Total: 2m 0.29s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/ipopt-3.14.5-54hqusk4eatd55xbvk2rsqenfbchslsw ==> Installing matio-1.5.26-2czfoiqbs2j2ckkeib6g7lcqqmfwczu5 [76/87] ==> No binary for matio-1.5.26-2czfoiqbs2j2ckkeib6g7lcqqmfwczu5 found: installing from source ==> Fetching https://github.com/tbeu/matio/releases/download/v1.5.26/matio-1.5.26.tar.gz ==> Ran patch() for matio ==> matio: Executing phase: 'autoreconf' ==> matio: Executing phase: 'configure' ==> matio: Executing phase: 'build' ==> matio: Executing phase: 'install' ==> matio: Successfully installed matio-1.5.26-2czfoiqbs2j2ckkeib6g7lcqqmfwczu5 Stage: 2.30s. Autoreconf: 0.00s. Configure: 4.79s. Build: 18.51s. Install: 0.14s. Post-install: 0.10s. Total: 25.98s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/matio-1.5.26-2czfoiqbs2j2ckkeib6g7lcqqmfwczu5 ==> Installing netcdf-c-4.9.2-lih4x2zjegh7hiq4kk4vson75d7lkz6l [77/87] ==> No binary for netcdf-c-4.9.2-lih4x2zjegh7hiq4kk4vson75d7lkz6l found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/bc/bc104d101278c68b303359b3dc4192f81592ae8640f1aee486921138f7f88cb7.tar.gz ==> Fetching https://mirror.spack.io/_source-cache/archive/01/0161eb870fdfaf61be9d70132c9447a537320342366362e76b8460c823bf95ca ==> Applied patch https://github.com/Unidata/netcdf-c/commit/f8904d5a1d89420dde0f9d2c0e051ba08d08e086.patch?full_index=1 ==> netcdf-c: Executing phase: 'autoreconf' ==> netcdf-c: Executing phase: 'configure' ==> netcdf-c: Executing phase: 'build' ==> netcdf-c: Executing phase: 'install' ==> netcdf-c: Successfully installed netcdf-c-4.9.2-lih4x2zjegh7hiq4kk4vson75d7lkz6l Stage: 2.00s. Autoreconf: 0.00s. Configure: 12.75s. Build: 16.21s. Install: 0.80s. Post-install: 0.10s. Total: 32.02s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/netcdf-c-4.9.2-lih4x2zjegh7hiq4kk4vson75d7lkz6l ==> Installing cgns-4.4.0-rxg7jc57amxgfyxd4p2wj454gwaz4rxk [78/87] ==> No binary for cgns-4.4.0-rxg7jc57amxgfyxd4p2wj454gwaz4rxk found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/3b/3b0615d1e6b566aa8772616ba5fd9ca4eca1a600720e36eadd914be348925fe2.tar.gz ==> No patches needed for cgns ==> cgns: Executing phase: 'cmake' ==> cgns: Executing phase: 'build' ==> cgns: Executing phase: 'install' ==> cgns: Successfully installed cgns-4.4.0-rxg7jc57amxgfyxd4p2wj454gwaz4rxk Stage: 0.62s. Cmake: 1.14s. Build: 27.93s. Install: 0.13s. Post-install: 0.09s. Total: 30.05s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/cgns-4.4.0-rxg7jc57amxgfyxd4p2wj454gwaz4rxk ==> Installing py-packaging-23.1-zthqkuzunaxmk74wsxxy5xcusrgx6jsg [79/87] ==> No binary for py-packaging-23.1-zthqkuzunaxmk74wsxxy5xcusrgx6jsg found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/a3/a392980d2b6cffa644431898be54b0045151319d1e7ec34f0cfed48767dd334f.tar.gz ==> No patches needed for py-packaging ==> py-packaging: Executing phase: 'install' ==> py-packaging: Successfully installed py-packaging-23.1-zthqkuzunaxmk74wsxxy5xcusrgx6jsg Stage: 0.53s. Install: 0.61s. Post-install: 0.08s. Total: 1.31s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/py-packaging-23.1-zthqkuzunaxmk74wsxxy5xcusrgx6jsg ==> Installing trilinos-15.0.0-kz2njneaeig2jn7mhca5usmdjencajww [80/87] ==> No binary for trilinos-15.0.0-kz2njneaeig2jn7mhca5usmdjencajww found: installing from source ==> Fetching https://github.com/trilinos/Trilinos/archive/refs/tags/trilinos-release-15-0-0.tar.gz ==> No patches needed for trilinos ==> trilinos: Executing phase: 'cmake' ==> trilinos: Executing phase: 'build' ==> trilinos: Executing phase: 'install' ==> trilinos: Successfully installed trilinos-15.0.0-kz2njneaeig2jn7mhca5usmdjencajww Stage: 33.31s. Cmake: 13.02s. Build: 28m 20.64s. Install: 4.37s. Post-install: 1.78s. Total: 29m 14.10s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/trilinos-15.0.0-kz2njneaeig2jn7mhca5usmdjencajww ==> Installing py-pyproject-metadata-0.7.1-m7qnhxiwtui3cesqtp7lvrx2feaktanl [81/87] ==> No binary for py-pyproject-metadata-0.7.1-m7qnhxiwtui3cesqtp7lvrx2feaktanl found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/0a/0a94f18b108b9b21f3a26a3d541f056c34edcb17dc872a144a15618fed7aef67.tar.gz ==> No patches needed for py-pyproject-metadata ==> py-pyproject-metadata: Executing phase: 'install' ==> py-pyproject-metadata: Successfully installed py-pyproject-metadata-0.7.1-m7qnhxiwtui3cesqtp7lvrx2feaktanl Stage: 0.39s. Install: 0.86s. Post-install: 0.07s. Total: 1.41s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/py-pyproject-metadata-0.7.1-m7qnhxiwtui3cesqtp7lvrx2feaktanl ==> Installing py-meson-python-0.15.0-jh3oug5animfrv2rfyjeo7f7ho45m45b [82/87] ==> No binary for py-meson-python-0.15.0-jh3oug5animfrv2rfyjeo7f7ho45m45b found: installing from source ==> Fetching https://files.pythonhosted.org/packages/source/m/meson_python/meson_python-0.15.0.tar.gz ==> No patches needed for py-meson-python ==> py-meson-python: Executing phase: 'install' ==> py-meson-python: Successfully installed py-meson-python-0.15.0-jh3oug5animfrv2rfyjeo7f7ho45m45b Stage: 0.72s. Install: 1.12s. Post-install: 0.09s. Total: 2.02s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/py-meson-python-0.15.0-jh3oug5animfrv2rfyjeo7f7ho45m45b ==> Installing py-numpy-1.26.4-67f2rt5jgv6pq7xgzqnd2f75p3lgwtie [83/87] ==> No binary for py-numpy-1.26.4-67f2rt5jgv6pq7xgzqnd2f75p3lgwtie found: installing from source ==> Fetching https://files.pythonhosted.org/packages/source/n/numpy/numpy-1.26.4.tar.gz ==> Applied patch /home/hansen/Codes/Morphorm/spack/var/spack/repos/builtin/packages/py-numpy/check_executables.patch ==> py-numpy: Executing phase: 'install' ==> py-numpy: Successfully installed py-numpy-1.26.4-67f2rt5jgv6pq7xgzqnd2f75p3lgwtie Stage: 1.73s. Install: 1m 15.40s. Post-install: 0.42s. Total: 1m 17.65s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/py-numpy-1.26.4-67f2rt5jgv6pq7xgzqnd2f75p3lgwtie ==> Installing nlopt-2.7.1-fv7lnydl3j2a63q3yskdtriiujhj6mxg [84/87] ==> No binary for nlopt-2.7.1-fv7lnydl3j2a63q3yskdtriiujhj6mxg found: installing from source ==> Fetching https://github.com/stevengj/nlopt/archive/v2.7.1.tar.gz ==> No patches needed for nlopt ==> nlopt: Executing phase: 'cmake' ==> nlopt: Executing phase: 'build' ==> nlopt: Executing phase: 'install' ==> nlopt: Successfully installed nlopt-2.7.1-fv7lnydl3j2a63q3yskdtriiujhj6mxg Stage: 2.20s. Cmake: 2.02s. Build: 10.78s. Install: 0.09s. Post-install: 0.09s. Total: 15.31s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/nlopt-2.7.1-fv7lnydl3j2a63q3yskdtriiujhj6mxg ==> Installing platoengine-develop-7nrdtjknnmuzgfhjajnnenhassv6a6vi [85/87] ==> No binary for platoengine-develop-7nrdtjknnmuzgfhjajnnenhassv6a6vi found: installing from source ==> No patches needed for platoengine ==> platoengine: Executing phase: 'cmake' ==> platoengine: Executing phase: 'build' ==> platoengine: Executing phase: 'install' ==> platoengine: Successfully installed platoengine-develop-7nrdtjknnmuzgfhjajnnenhassv6a6vi Stage: 0.00s. Cmake: 2.59s. Build: 5m 35.75s. Install: 0.63s. Post-install: 0.31s. Total: 5m 39.53s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/platoengine-develop-7nrdtjknnmuzgfhjajnnenhassv6a6vi ==> Installing platoanalyze-develop-ivcljcr4gapykaq5jn2uccvcvt3yvwxq [86/87] ==> No binary for platoanalyze-develop-ivcljcr4gapykaq5jn2uccvcvt3yvwxq found: installing from source ==> No patches needed for platoanalyze ==> platoanalyze: Executing phase: 'cmake' ==> platoanalyze: Executing phase: 'build' ==> platoanalyze: Executing phase: 'install' ==> platoanalyze: Successfully installed platoanalyze-develop-ivcljcr4gapykaq5jn2uccvcvt3yvwxq Stage: 0.00s. Cmake: 2.59s. Build: 19m 35.15s. Install: 0.97s. Post-install: 0.31s. Total: 19m 39.33s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/platoanalyze-develop-ivcljcr4gapykaq5jn2uccvcvt3yvwxq ==> Installing morphormtests-main-v6hkfphhb3r7xbxxg3ixssexjavca4rx [87/87] ==> No binary for morphormtests-main-v6hkfphhb3r7xbxxg3ixssexjavca4rx found: installing from source ==> No patches needed for morphormtests ==> morphormtests: Executing phase: 'cmake' ==> morphormtests: Executing phase: 'build' ==> morphormtests: Executing phase: 'install' ==> morphormtests: Successfully installed morphormtests-main-v6hkfphhb3r7xbxxg3ixssexjavca4rx Stage: 0.00s. Cmake: 2.15s. Build: 3m 45.82s. Install: 0.26s. Post-install: 0.14s. Total: 3m 48.68s [+] /home/hansen/Codes/Morphorm/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/morphormtests-main-v6hkfphhb3r7xbxxg3ixssexjavca4rx ==> Updating view at /home/hansen/Codes/Morphorm/.spack-env/view

Moris test location is /home/hansen/Codes/Morphorm/moris/spack-build-vfh4u5b

Internal ctest changing into directory: /home/hansen/Codes/Morphorm/moris/spack-build-vfh4u5b Failed to change working directory to "/home/hansen/Codes/Morphorm/moris/spack-build-vfh4u5b" : No such file or directory

Engine test location is /home/hansen/Codes/Morphorm/engine/spack-build-7nrdtjk

Internal ctest changing into directory: /home/hansen/Codes/Morphorm/engine/spack-build-7nrdtjk Test project /home/hansen/Codes/Morphorm/engine/spack-build-7nrdtjk Start 1: PlatoTools_UnitTester 1/5 Test #1: PlatoTools_UnitTester ............ Passed 0.05 sec Start 2: PlatoXMLGenerator_UnitTester 2/5 Test #2: PlatoXMLGenerator_UnitTester ..... Passed 0.64 sec Start 3: Plato_Operations_UnitTester 3/5 Test #3: Plato_Operations_UnitTester ...... Passed 0.06 sec Start 4: PlatoSu2ToExodus_UnitTester 4/5 Test #4: PlatoSu2ToExodus_UnitTester ...... Passed 0.01 sec Start 5: PlatoMainUnitTester 5/5 Test #5: PlatoMainUnitTester .............. Passed 13.89 sec

100% tests passed, 0 tests failed out of 5

Label Time Summary: large = 13.89 secproc (1 test) small = 0.76 secproc (4 tests)

Total Test time (real) = 14.66 sec

Test location is /home/hansen/Codes/Morphorm/morphormtests/spack-build-v6hkfph

Internal ctest changing into directory: /home/hansen/Codes/Morphorm/morphormtests/spack-build-v6hkfph Test project /home/hansen/Codes/Morphorm/morphormtests/spack-build-v6hkfph Start 1: AD_Elastic_Tet4_timing 1/38 Test #1: AD_Elastic_Tet4_timing ................................ Passed 0.00 sec Start 2: AD_Elastic_Tet4_regression 2/38 Test #2: AD_Elastic_Tet4_regression ............................***Failed 0.19 sec Start 3: Analyze_CompMin3D_Restart_OC 3/38 Test #3: Analyze_CompMin3D_Restart_OC ..........................***Failed 0.66 sec Start 4: Analyze_MassProp3D_MMA 4/38 Test #4: Analyze_MassProp3D_MMA ................................***Failed 0.30 sec Start 5: Analyze_CompMin2D_OC 5/38 Test #5: Analyze_CompMin2D_OC ..................................***Failed 0.24 sec Start 6: Analyze_CompMin3D_2Load_OC 6/38 Test #6: Analyze_CompMin3D_2Load_OC ............................***Failed 0.25 sec Start 7: Analyze_CompMin3D_MultiBlock_OC 7/38 Test #7: Analyze_CompMin3D_MultiBlock_OC .......................***Failed 0.23 sec Start 8: Analyze_CompMin3D_Orthotropic_OC 8/38 Test #8: Analyze_CompMin3D_Orthotropic_OC ......................***Failed 0.24 sec Start 9: Analyze_CompMin3D_2_constraints_KSAL 9/38 Test #9: Analyze_CompMin3D_2_constraints_KSAL ..................***Failed 0.27 sec Start 10: Analyze_CompMin3D_2Loads_1Performer_OC 10/38 Test #10: Analyze_CompMin3D_2Loads_1Performer_OC ................***Failed 0.22 sec Start 11: Analyze_DisplacementCriterion_MMA 11/38 Test #11: Analyze_DisplacementCriterion_MMA .....................***Failed 0.28 sec Start 12: Analyze_FixedBlocks_NoEnforceBounds_OC 12/38 Test #12: Analyze_FixedBlocks_NoEnforceBounds_OC ................***Failed 0.27 sec Start 13: Analyze_FixedBlocks_DefaultEnforceBounds_OC 13/38 Test #13: Analyze_FixedBlocks_DefaultEnforceBounds_OC ...........***Failed 0.26 sec Start 14: Analyze_Helmholtz3D_Projection_OC 14/38 Test #14: Analyze_Helmholtz3D_Projection_OC .....................***Failed 0.23 sec Start 15: Analyze_Helmholtz3D_SurfaceLengthScale_OC 15/38 Test #15: Analyze_Helmholtz3D_SurfaceLengthScale_OC .............***Failed 0.28 sec Start 16: Analyze_Helmholtz3D_SurfaceLengthScale_SymmPlane_OC 16/38 Test #16: Analyze_Helmholtz3D_SurfaceLengthScale_SymmPlane_OC ...***Failed 0.26 sec Start 17: Analyze_Uncertain_Load_OC 17/38 Test #17: Analyze_Uncertain_Load_OC .............................***Failed 0.26 sec Start 18: Analyze_Thermal_Opt_MMA 18/38 Test #18: Analyze_Thermal_Opt_MMA ...............................***Failed 0.26 sec Start 19: Analyze_Tmech_Opt_MMA 19/38 Test #19: Analyze_Tmech_Opt_MMA .................................***Failed 0.24 sec Start 20: Analyze_Tmech_PNorm_Opt_MMA 20/38 Test #20: Analyze_Tmech_PNorm_Opt_MMA ...........................***Failed 0.25 sec Start 21: Analyze_VolAvgTensile_MMA 21/38 Test #21: Analyze_VolAvgTensile_MMA .............................***Failed 0.22 sec Start 22: Analyze_Thermomechanics_MMA_IPOPT 22/38 Test #22: Analyze_Thermomechanics_MMA_IPOPT .....................***Failed 0.23 sec Start 23: Analyze_MultiScenario 23/38 Test #23: Analyze_MultiScenario .................................***Failed 0.05 sec Start 24: Analyze_ParallelESP_MMA 24/38 Test #24: Analyze_ParallelESP_MMA ...............................***Failed 0.76 sec Start 25: runPlatoMathHelpersUnitTests 25/38 Test #25: runPlatoMathHelpersUnitTests ..........................***Failed 0.20 sec Start 26: runBLASUnitTests 26/38 Test #26: runBLASUnitTests ...................................... Passed 0.16 sec Start 27: runElectroThermalUnitTests 27/38 Test #27: runElectroThermalUnitTests ............................ Passed 0.16 sec Start 28: runEllipticNitscheUnitTests 28/38 Test #28: runEllipticNitscheUnitTests ........................... Passed 0.18 sec Start 29: runLinearMaterialModelUnitTests 29/38 Test #29: runLinearMaterialModelUnitTests ....................... Passed 0.15 sec Start 30: runPlatoMaterialModelUnitTests 30/38 Test #30: runPlatoMaterialModelUnitTests ........................ Passed 0.15 sec Start 31: runMaterialBasisUnitTests 31/38 Test #31: runMaterialBasisUnitTests ............................. Passed 0.09 sec Start 32: runReadDataUnitTests 32/38 Test #32: runReadDataUnitTests .................................. Passed 0.16 sec Start 33: runPlatoSpatialModelUnitTests 33/38 Test #33: runPlatoSpatialModelUnitTests ......................... Passed 0.16 sec Start 34: runElementUnitTests 34/38 Test #34: runElementUnitTests ................................... Passed 0.15 sec Start 35: runPlatoMathTypesUnitTests 35/38 Test #35: runPlatoMathTypesUnitTests ............................ Passed 0.09 sec Start 36: runTensorNormUnitTests 36/38 Test #36: runTensorNormUnitTests ................................ Passed 0.09 sec Start 37: runCrsMatrixUtilsUnitTests 37/38 Test #37: runCrsMatrixUtilsUnitTests ............................ Passed 0.08 sec Start 38: BamG_UnitTester 38/38 Test #38: BamG_UnitTester ....................................... Passed 0.01 sec

37% tests passed, 24 tests failed out of 38

Label Time Summary: large = 0.77 secproc (3 tests) medium = 2.07 secproc (8 tests) small = 0.67 sec*proc (3 tests)

Total Test time (real) = 8.28 sec

The following tests FAILED: 2 - AD_Elastic_Tet4_regression (Failed) 3 - Analyze_CompMin3D_Restart_OC (Failed) 4 - Analyze_MassProp3D_MMA (Failed) 5 - Analyze_CompMin2D_OC (Failed) 6 - Analyze_CompMin3D_2Load_OC (Failed) 7 - Analyze_CompMin3D_MultiBlock_OC (Failed) 8 - Analyze_CompMin3D_Orthotropic_OC (Failed) 9 - Analyze_CompMin3D_2_constraints_KSAL (Failed) 10 - Analyze_CompMin3D_2Loads_1Performer_OC (Failed) 11 - Analyze_DisplacementCriterion_MMA (Failed) 12 - Analyze_FixedBlocks_NoEnforceBounds_OC (Failed) 13 - Analyze_FixedBlocks_DefaultEnforceBounds_OC (Failed) 14 - Analyze_Helmholtz3D_Projection_OC (Failed) 15 - Analyze_Helmholtz3D_SurfaceLengthScale_OC (Failed) 16 - Analyze_Helmholtz3D_SurfaceLengthScale_SymmPlane_OC (Failed) 17 - Analyze_Uncertain_Load_OC (Failed) 18 - Analyze_Thermal_Opt_MMA (Failed) 19 - Analyze_Tmech_Opt_MMA (Failed) 20 - Analyze_Tmech_PNorm_Opt_MMA (Failed) 21 - Analyze_VolAvgTensile_MMA (Failed) 22 - Analyze_Thermomechanics_MMA_IPOPT (Failed) 23 - Analyze_MultiScenario (Failed) 24 - Analyze_ParallelESP_MMA (Failed) 25 - runPlatoMathHelpersUnitTests (Failed) Errors while running CTest Output from these tests are in: /home/hansen/Codes/Morphorm/morphormtests/spack-build-v6hkfph/Testing/Temporary/LastTest.log Use "--rerun-failed --output-on-failure" to re-run the failed cases verbosely. cp: cannot stat '/home/hansen/Codes/Morphorm/moris/spack-build-vfh4u5b/Testing/Temporary/LastTest.log': No such file or directory

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