Suggested Citations

ZetaHunter uses lots of awesome research and software. So in addition to citing ZetaHunter, please cite the following:

Papers

• Zetaproteobacteria database curation: McAllister, S. M., R. E. Davis, J. M. McBeth, B. M. Tebo, D. Emerson, and C. L. Moyer. 2011. Biodiversity and emerging biogeography of the neutrophilic iron-oxidizing Zetaproteobacteria. Appl. Environ. Microbiol. 77:5445–5457. doi:10.1128/AEM.00533-11

Software

• Mothur: Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41.
• Arb SILVA: Quast, C., E. Pruesse, P. Yilmaz, J. Gerken, T. Schweer, P. Yarza, J. Peplies, and F. O. Glöckner. 2013. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucl. Acids Res. 41(D1): D590-D596.
• SINA: Pruesse, E., J. Peplies, and F. O. Glöckner. 2012. SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28:1823–1829.
• SortMeRNA: Kopylova E., Noé L. and Touzet H., "SortMeRNA: Fast and accurate filtering of ribosomal RNAs in metatranscriptomic data", Bioinformatics (2012), doi: 10.1093/bioinformatics/bts611.
• UCHIME: Edgar, R. C., B. J. Haas, J. C. Clemente, C. Quince, and R. Knight. 2011. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics, doi: 10.1093/bioinformatics/btr381