WishList - mlin/PhyloCSF GitHub Wiki

  • --frames=-3 mode
  • Different alignment formats: PHYLIP, SeqXML
  • Separately report the portion of the likelihood ratio arising from ancestral sequence prior
  • Option to automatically create sub-model for only the species present in each alignment
  • Priors on alignment coverage
  • BayesFactor strategy
  • Docker image
  • Library with C ABI
  • Version for HyPhy batch language