CompartmentPlugin -> Compartment

• metaData -> CompartmentMetaData

ModelPlugin -> Model

• listOfModelVariables (ListOf) -> ModelVariable
• listOfDataSources (ListOf) -> DataSource
• listOfPrimaryModels (ListOf) -> PrimaryModel

ParameterPlugin -> Parameter

• metaData -> ParameterMetaData
• listOfCorrelations (listOf) -> Correlation

RulePlugin -> Rule

• metaData -> RuleMetaData
• listOfReferences (ListOf) -> Reference

SpeciesPlugin -> Species

• metaData -> SpeciesMetaData