Pfam metagneome - microDM/MicFunPred GitHub Wiki

Pfam metagenome

This directory will contain predicted metagenome in terms of Pfam.

File	Description
Pfam_metagenome.tsv.gz	Tab separated, Pfam metagenome, each column represents samples while rows represents Pfam
Pfam_metagenome_with_description.tsv.gz	Pfam metagenome along with annotations, names and description

Pfam_metagenome.tsv.gz

zcat Pfam_metagenome.tsv.gz | head

	sample1	sample2	sample3
pfam00004	251.0	1003.0	770.0
pfam00005	2861.0	14317.0	5465.0
pfam00006	138.0	595.0	348.0
pfam00009	259.0	1271.0	842.0
pfam00012	87.0	457.0	160.0
pfam00013	38.0	178.0	232.0
pfam00027	43.0	312.0	155.0
pfam00035	30.0	132.0	118.0
pfam00044	64.0	369.0	117.0

Pfam_metagenome_with_description.tsv.gz

zcat Pfam_metagenome_with_description.tsv.gz | head

	sample1	sample2	sample3	PFAM_Name	PFAM_desc
pfam00004	251.0	1003.0	770.0	AAA	ATPase family associated with various cellular activities (AAA)
pfam00005	2861.0	14317.0	5465.0	ABC_tran	ABC transporter
pfam00006	138.0	595.0	348.0	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain
pfam00009	259.0	1271.0	842.0	GTP_EFTU	Elongation factor Tu GTP binding domain
pfam00011	48.0	305.0	135.0	HSP20	Hsp20/alpha crystallin family
pfam00012	87.0	457.0	160.0	HSP70	Hsp70 protein
pfam00013	38.0	178.0	232.0	KH_1	KH domain
pfam00015	260.0	1657.0	0.0	MCPsignal	Methyl-accepting chemotaxis protein (MCP) signalling domain
pfam00016	0.0	0.0	83.0	RuBisCO_large	Ribulose bisphosphate carboxylase large chain, catalytic domain