Module 2.2 bwa mem, samtools - mestato/EPP622_2026 GitHub Wiki

Stats on genome

conda install bioconda::bbmap 

It is nice to get some stats on our genome. Lets use BBMap for this.

which stats.sh
stats.sh in=../../raw_data/genome.fastq.gz
stats.sh in=../../raw_data/genome.fastq.gz > genome.stats.txt