Amplicon Detailed Resources - merckey/microbiome_helper GitHub Wiki

Detailed descriptions of amplicon sequencing processing steps are available on the below pages.

• Stitch reads
• Sequence QC
• Remove low quality reads
• Remove chimeric reads
• OTU picking
• Alpha and beta diversity
• PICRUSt workflow
• Predict phenotypes
• Sequence error correction
• Additional QIIME analysis