SB Uppercase - mendessoares/BuddySuite GitHub Wiki

--uppercase, -uc

Description

Convert all sequences in a file to uppercase characters (if supported by the output format).

Example

Input file: Mle-Panxα2.fa

>Mle-Panxα2 - ML25998a.
mvldlisgslngflkiksvsiddqwdqinrtylvmfcilsgtimtfkqnlgsiihcisda
RGDDSSFADAHATfvqdycaaqglytlkevydkswpdeipypgilqmktigcfpgrqfkn
gtpiqcpdekdlkpfttvyhvwymfvpfyfcavgiafyfpytvfrhlsgiydikpmlnsl
aldigayteedisrridnvsrwlyikldPYMNNMLPYTQIvhkhsifytvmlvkvmylat
svsifyathrifdqgnfalygydvlmsipqetsykvmdtifpkmvgceinmwgrtgeqse
sllcvlpqnignqyfflifwflliltilsncisvivtifrfifvsgsykrflatsllnhe
ERYKLVFTHvgttgryilllcadhsnpkifedlleivcsllianyhkrkrsrdkghsrae
gvgtkgrhglsfvdstv

Usage

$: sb sequences.fa -uc

Output

>Mle-Panxα2 - ML25998a.
MVLDLISGSLNGFLKIKSVSIDDQWDQINRTYLVMFCILSGTIMTFKQNLGSIIHCISDA
RGDDSSFADAHATFVQDYCAAQGLYTLKEVYDKSWPDEIPYPGILQMKTIGCFPGRQFKN
GTPIQCPDEKDLKPFTTVYHVWYMFVPFYFCAVGIAFYFPYTVFRHLSGIYDIKPMLNSL
ALDIGAYTEEDISRRIDNVSRWLYIKLDPYMNNMLPYTQIVHKHSIFYTVMLVKVMYLAT
SVSIFYATHRIFDQGNFALYGYDVLMSIPQETSYKVMDTIFPKMVGCEINMWGRTGEQSE
SLLCVLPQNIGNQYFFLIFWFLLILTILSNCISVIVTIFRFIFVSGSYKRFLATSLLNHE
ERYKLVFTHVGTTGRYILLLCADHSNPKIFEDLLEIVCSLLIANYHKRKRSRDKGHSRAE
GVGTKGRHGLSFVDSTV