SB Lowercase - mendessoares/BuddySuite GitHub Wiki

--lowercase, -lc

Description

Convert all sequences to lowercase characters (if supported by the output format).

Example

Input file: Panxα2.fa

>Mle-Panxα2 - ML25998a.
MVLDLISGSLNGFLKIKSVSIDDQWDQINRTYLVMFCILSGTIMTFKQNLGSIIHCISDA
RGDDSSFADAHATFVQDYCAAQGLYTLKEVYDKSWPDEIPYPGILQMKTIGCFPGRQFKN
GTPIQCPDEKDLKPFTTVYHVWYMFVPFYFCAVGIAFYFPYTVFRHLSGIYDIKPMLNSL
ALDIGAYTEEDISRRIDNVSRWLYIKLDPYMNNMLPYTQIVHKHSIFYTVMLVKVMYLAT
SVSIFYATHRIFDQGNFALYGYDVLMSIPQETSYKVMDTIFPKMVGCEINMWGRTGEQSE
SLLCVLPQNIGNQYFFLIFWFLLILTILSNCISVIVTIFRFIFVSGSYKRFLATSLLNHE
ERYKLVFTHVGTTGRYILLLCADHSNPKIFEDLLEIVCSLLIANYHKRKRSRDKGHSRAE
GVGTKGRHGLSFVDSTV

Usage

$: sb Panxα2.fa -lc

Output

>Mle-Panxα2 - ML25998a.
mvldlisgslngflkiksvsiddqwdqinrtylvmfcilsgtimtfkqnlgsiihcisda
rgddssfadahatfvqdycaaqglytlkevydkswpdeipypgilqmktigcfpgrqfkn
gtpiqcpdekdlkpfttvyhvwymfvpfyfcavgiafyfpytvfrhlsgiydikpmlnsl
aldigayteedisrridnvsrwlyikldpymnnmlpytqivhkhsifytvmlvkvmylat
svsifyathrifdqgnfalygydvlmsipqetsykvmdtifpkmvgceinmwgrtgeqse
sllcvlpqnignqyfflifwflliltilsncisvivtifrfifvsgsykrflatsllnhe
eryklvfthvgttgryilllcadhsnpkifedlleivcsllianyhkrkrsrdkghsrae
gvgtkgrhglsfvdstv