SB Guess alphabet - mendessoares/BuddySuite GitHub Wiki

--alphabet, -ga

Description

Auto-detect and return the sequence type from each input file. DNA, RNA, and protein are currently supported.

Example

Input directory:

$: ls ~/test_files
>>> Mnemiopsis_cds.gb    Dre.nex          align.st    temp.gb
    Mnemiopsis_cds.fa    N-terms.gb       fastq.txt   gibberish.txt
    Mnemiopsis_pep.gb    N-terms_pep.txt  temp.fa

Usage example

$: sb ~/test_files/* -ga

Output

Mnemiopsis_cds.gb	-->	dna
Mnemiopsis_cds.fa	-->	dna
Mnemiopsis_pep.gb	-->	prot
Dre.nex				-->	prot
N-terms.gb			-->	dna
N-terms_pep.fa		-->	prot
align.st			-->	rna
fastq.txt			-->	dna
gibberish.txt       --> Undetermined
temp.fa				-->	prot
temp.gb				-->	rna