SB Complement - mendessoares/BuddySuite GitHub Wiki

--complement, -cmp

Description

Return the complement of DNA or RNA sequences

Examples

Input file: DNA.fa

>Mle-Panxα2 cDNA - ML25998a.
ATGGTATTGGATCTCATTTCTGGAAGCTTGAATGGCTTTTTAAAGATCAAGTCAGTTAGC
ATCGACGATCAGTGGGACCAGATTAACAGAACCTATTTGGTCATGTTTTGTATTTTATCT
GGTACAATCATGACCTTTAAACAGAATTTAGGATCAATAATACACTGTATATCGGATGCA
AGAGGCGACGACAGTTCGTTTGCGGATGCTCATGCGACATTTGTGCAAGACTATTGTGCT
GCTCAAGGGCTGTACACTTTAAAAGAAGTGTATGACAAGTCTTGGCCAGATGAAATTCCT

Usage example 1

$: sb DNA.fa -cmp

Output

>Mle-Panxα2 cDNA - ML25998a.
TACCATAACCTAGAGTAAAGACCTTCGAACTTACCGAAAAATTTCTAGTTCAGTCAATCG
TAGCTGCTAGTCACCCTGGTCTAATTGTCTTGGATAAACCAGTACAAAACATAAAATAGA
CCATGTTAGTACTGGAAATTTGTCTTAAATCCTAGTTATTATGTGACATATAGCCTACGT
TCTCCGCTGCTGTCAAGCAAACGCCTACGAGTACGCTGTAAACACGTTCTGATAACACGA
CGAGTTCCCGACATGTGAAATTTTCTTCACATACTGTTCAGAACCGGTCTACTTTAAGGA

Input file: RNA.fa

>Mle-Panxα2 mRNA - ML25998a.
AUGGUAUUGGAUCUCAUUUCUGGAAGCUUGAAUGGCUUUUUAAAGAUCAAGUCAGUUAGC
AUCGACGAUCAGUGGGACCAGAUUAACAGAACCUAUUUGGUCAUGUUUUGUAUUUUAUCU
GGUACAAUCAUGACCUUUAAACAGAAUUUAGGAUCAAUAAUACACUGUAUAUCGGAUGCA
AGAGGCGACGACAGUUCGUUUGCGGAUGCUCAUGCGACAUUUGUGCAAGACUAUUGUGCU
GCUCAAGGGCUGUACACUUUAAAAGAAGUGUAUGACAAGUCUUGGCCAGAUGAAAUUCCU

Usage example 2

$: sb RNA.fa -cmp

Output

>Mle-Panxα2 mRNA - ML25998a.
UACCAUAACCUAGAGUAAAGACCUUCGAACUUACCGAAAAAUUUCUAGUUCAGUCAAUCG
UAGCUGCUAGUCACCCUGGUCUAAUUGUCUUGGAUAAACCAGUACAAAACAUAAAAUAGA
CCAUGUUAGUACUGGAAAUUUGUCUUAAAUCCUAGUUAUUAUGUGACAUAUAGCCUACGU
UCUCCGCUGCUGUCAAGCAAACGCCUACGAGUACGCUGUAAACACGUUCUGAUAACACGA
CGAGUUCCCGACAUGUGAAAUUUUCUUCACAUACUGUUCAGAACCGGUCUACUUUAAGGA