DatabaseBuddy - mendessoares/BuddySuite GitHub Wiki
Command line sequence manipulation tools
Functions
| Function | Flag | Parameters | Brief Description |
|---|---|---|---|
| guess_database | -gd | <accn1,accn2,etc...> | Outputs the database each provided accession is most likely coming from. |
| live_shell | -ls | <accn1,accn2,search term,etc...>(optional) | Launch the live shell. Search terms and accessions can be provided here or from within the session once launched. |
Modifying flags
| Flag | Brief Description |
|---|---|
| -d --database | Select a specific database to search (ncbi_nuc, ncbi_prot, uniprot, ensembl). Default is all of them. |
| -o --out_format | Specify the format you want records returned in. |