AB Back transcribe - mendessoares/BuddySuite GitHub Wiki
--back_transcribe, -r2d
Description
Convert RNA alignments to DNA.
Examples
Input file: Alignments_rna.physr
3 100
Mle-Panxα9 ---auguuagacauacuuucaaaguuuaaaggaguuacuccuuuuaaagguauaacgauagaugacgggugggaucaacucaaucggaguuuuauguucg
Mle-Panxα4 augguuauugagcugcuagcuggauacaaaggucuguccccguuuaaagacgcgacuguugacgacucaugggaccaaauaaaccgauguuacguguuca
Mle-Panxα6 auguuauuggagauauuagcgaacuucaaaggagcgacaccuuucaaagaaauaguucuagaugacaagugggaccagauuaaccgauguuacauguucc
3 100
Ael_PanxβA ---------------------------------------------------------------------------------------AUGGUAGUCAUUC
Ael_PanxβB ---------------------------------------------------------------------------------------AUGGUUGUCAUAC
Ael_PanxβC AUGCCCAACAACAUAUACCCAAACAGACUAUUCGUGAAGACUAAUGAUAUCCCGGAAAAAUUAAACACUCCGUGGUCAUACGAAAAAAUGGUUGUAGUGC
Usage example
$: alb Alignments_rna.physr -r2d
Output
3 100
Mle-Panxα9 ---atgttagacatactttcaaagtttaaaggagttactccttttaaaggtataacgatagatgacgggtgggatcaactcaatcggagttttatgttcg
Mle-Panxα4 atggttattgagctgctagctggatacaaaggtctgtccccgtttaaagacgcgactgttgacgactcatgggaccaaataaaccgatgttacgtgttca
Mle-Panxα6 atgttattggagatattagcgaacttcaaaggagcgacacctttcaaagaaatagttctagatgacaagtgggaccagattaaccgatgttacatgttcc
3 100
Ael_PanxβA ---------------------------------------------------------------------------------------ATGGTAGTCATTC
Ael_PanxβB ---------------------------------------------------------------------------------------ATGGTTGTCATAC
Ael_PanxβC ATGCCCAACAACATATACCCAAACAGACTATTCGTGAAGACTAATGATATCCCGGAAAAATTAAACACTCCGTGGTCATACGAAAAAATGGTTGTAGTGC