biology - mars0i/research-clojure GitHub Wiki

Bioclojure: a functional library for the manipulation of biological sequences in Bioinformatics, by Jordan Plieskatt, Gabriel Rinaldi, Paul J. Brindley, Xinying Jia, Jeremy Potriquet, Jeffrey Bethony, and Jason Mulvenna.

Several DNA sequence data manipulation tools from Chrovis.

Marshall Abrams' linkage, a Clojurescript implementation of a simulation model of two-locus selection based on material in John Gillespie's Population Genetics: A Concise Guide, 2nd ed.

Marshall Abrams' pasta: Agent-based simulation using MASON, with natural selection on (a) agents who implement a very simple model of individual learning by prediction error minimization, (b) agents who don't learn, but produce different types of offspring that are well suited or poorly suited for survival in different environments, (c) agents who engage in a simple form of social learning by copying from nearby agents.