File Format: Mutation Data (Genes) - lrgr/explosig-docker GitHub Wiki

The gene mutation file specifies which genes have been mutated in particular samples. This file should contain the following columns:

• Sample: The sample ID.
• Gene Symbol: The gene ID.
• Mutation Classification: The class of mutation. Valid values are Silent, Missense, Frameshift, Splice Site, Nonsense, Nonsense, in-frame indel, Other mutation, Nonstop, Translation Start Site.

An example of this file looks as follows:

Sample	Gene Symbol	Mutation Classification
SA506	BTG1	Silent
SA506	DNAH7	Missense
SA519208	MZB1	Other mutation
...	...	...