The mitoz tools msaconverter command - linzhi2013/MitoZ GitHub Wiki

$ mitoz-tools msaconverter -h
usage: mitoz-tools msaconverter [-h] [-i <INFILE>] [-o <OUTFILE>]
                                [-p {fasta,clustal,stockholm,nexus,phylip,phylip-sequential,phylip-relaxed,mauve,maf}]
                                [-q {fasta,clustal,stockholm,nexus,phylip,phylip-sequential,phylip-relaxed,mauve,maf}]
                                [-t {DNA,RNA,protein}]

Convert multiple-sequence-alignment into different formats.
See https://biopython.org/wiki/AlignIO for format introductions.
By Guanliang MENG.

optional arguments:
  -h, --help            show this help message and exit
  -i <INFILE>           input msa file
  -o <OUTFILE>          output msa file
  -p {fasta,clustal,stockholm,nexus,phylip,phylip-sequential,phylip-relaxed,mauve,maf}
                        input msa format [fasta]
  -q {fasta,clustal,stockholm,nexus,phylip,phylip-sequential,phylip-relaxed,mauve,maf}
                        input msa format [phylip-relaxed]
  -t {DNA,RNA,protein}  Molecule types [DNA]
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