FastQC

FastQC raw Illumina

R1

R2

Trimmomatic

Input Read Pairs: 20979851 Both Surviving: 20737992 (98.85%) Forward Only Surviving: 147044 (0.70%) Reverse Only Surviving: 88049 (0.42%) Dropped: 6766 (0.03%)

FastQC with trimmed Illumina, output from Trimmomatic