Contents

• Medline folder: 832 MEDLINE titles, annotated in the BRAT stand-off annotation format, and 3 BRAT configuration files
• The annotations for the 832 MEDLINE citations have been uploaded to PubAnnotation (total: 11936 annotations, often nested)
  • They were converted from their initial BRAT format to PubAnnotation format; the conversion script is available
  • Each annotated text span has both a UMLS semantic group and a UMLS Metathesaurus concept unique identifier (CUI)
  • A name space is defined for CUIs; in the visualisation, each is linked to the NLM's UMLS Metathesaurus Browser
• Examples: search for angine, view a document
  • The French title (VernacularTitle) bears annotations, which can be viewed for instance in TextAE
  • The English title is present (within square brackets), as well as the English abstract if it exists
• Not yet in PubAnnotation:
  • EMEA folder: 3 EMEA documents, segmented into 11 files, annotated in the BRAT stand-off annotation format, and 3 BRAT configuration files
  • eval folder: brateval evaluation tool with specific functionalities developed for CLEF e-Health 2015 Task 1b, brateval-ehealth-2015-02-20.jar