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Struo2 is a pipeline (+ associated utility tools) for creating custom metagenome profiling databases.

See the README for general instructions.

Tutorials

• Custom GTDB database download and usage
  • Using pre-generated databases
• Database generation
  • Creating your own custom databases
• Database updating
  • Adding genomes
    • Adding new genomes (e.g., MAGs from metagenome assembly of your samples)
  • Adding genes
    • Adding new genes (e.g., genes from a gene-based assembly of your samples)